NP-MRD: Showing NP-Card for xestoproxamine a, (rel)- (NP0241649)

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Record Information

Version

2.0

Created at

2022-09-07 01:47:04 UTC

Updated at

2022-09-07 01:47:04 UTC

NP-MRD ID

NP0241649

Secondary Accession Numbers

None

Natural Product Identification

Common Name

xestoproxamine a, (rel)-

Description

Xestoproxamine A, (rel)-, also known as xestoproxamine a, belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms. xestoproxamine a, (rel)- is found in Neopetrosia proxima. Based on a literature review very few articles have been published on Xestoproxamine A, (rel)-.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072203472D          

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M  END

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M  END


  Mrv1652309072203472D          

 32 35  0  0  1  0            999 V2000
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 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
  1 28  1  0  0  0  0
 22 29  1  0  0  0  0
 18 29  1  0  0  0  0
 20 30  1  0  0  0  0
  5 30  1  0  0  0  0
 30 31  1  6  0  0  0
 31 32  1  0  0  0  0
  7 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0241649

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C1CN2C[C@@H]3CC\C=C/CCCCCCN4C[C@H](C[C@H](C4)[C@@H]13)CC\C=C/CCCCCC2

> <INCHI_IDENTIFIER>
InChI=1S/C30H52N2/c1-3-7-11-15-20-31-22-19-30-28(25-31)18-14-10-6-2-4-8-12-16-21-32-24-27(17-13-9-5-1)23-29(30)26-32/h5-6,9-10,27-30H,1-4,7-8,11-26H2/b9-5-,10-6-/t27-,28-,29+,30-/m0/s1

> <INCHI_KEY>
MEZYUJANHMJTGP-HCBWJYQNSA-N

> <FORMULA>
C30H52N2

> <MOLECULAR_WEIGHT>
440.76

> <EXACT_MASS>
440.413049682

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
84

> <JCHEM_AVERAGE_POLARIZABILITY>
56.01627119282607

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(8Z,12R,13S,23Z,27S,29S)-1,16-diazatetracyclo[25.3.1.1^{12,16}.0^{13,29}]dotriaconta-8,23-diene

> <JCHEM_LOGP>
7.552335098

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA_STRONGEST_BASIC>
9.526160009381691

> <JCHEM_POLAR_SURFACE_AREA>
6.48

> <JCHEM_REFRACTIVITY>
143.60539999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(8Z,12R,13S,23Z,27S,29S)-1,16-diazatetracyclo[25.3.1.1^{12,16}.0^{13,29}]dotriaconta-8,23-diene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.615  -2.642   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.260  -1.911   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.276  -1.793   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.726  -2.311   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.841  -3.374   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.781  -2.154   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       6.308  -2.359   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       7.972  -1.165   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.471  -1.520   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.740  -2.392   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.608  -3.664   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.958  -5.164   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.743  -6.688   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.992  -8.033   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.805  -9.015   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.344  -9.502   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.806  -9.428   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.398  -8.804   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.603  -7.277   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.383  -6.337   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.959  -6.923   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       2.754  -8.449   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       1.066  -9.157   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.460  -8.952   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.772  -8.145   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -2.641  -6.873   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.918  -5.359   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -2.555  -3.862   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.974  -9.390   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.427  -4.798   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.953  -5.002   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.894  -3.783   0.000  0.00  0.00           C+0
CONECT    1    2   28                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   30                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   32                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   29                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   30                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   29                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27    1                                                       
CONECT   29   22   18                                                       
CONECT   30   20    5   31                                                  
CONECT   31   30   32                                                       
CONECT   32   31    7                                                       
MASTER        0    0    0    0    0    0    0    0   32    0   70    0
END

View in JSmol

Synonyms

Value	Source
Xestoproxamine a	MeSH

Chemical Formula

C₃₀H₅₂N₂

Average Mass

440.7600 Da

Monoisotopic Mass

440.41305 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C1CN2C[C@@H]3CC\C=C/CCCCCCN4C[C@H](C[C@H](C4)[C@@H]13)CC\C=C/CCCCCC2

InChI Identifier

InChI=1S/C30H52N2/c1-3-7-11-15-20-31-22-19-30-28(25-31)18-14-10-6-2-4-8-12-16-21-32-24-27(17-13-9-5-1)23-29(30)26-32/h5-6,9-10,27-30H,1-4,7-8,11-26H2/b9-5-,10-6-/t27-,28-,29+,30-/m0/s1

InChI Key

MEZYUJANHMJTGP-HCBWJYQNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Neopetrosia proxima	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Piperidines

Sub Class

Not Available

Direct Parent

Piperidines

Alternative Parents

Substituents

Piperidine
Tertiary aliphatic amine
Tertiary amine
Azacycle
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

piperidines (CHEBI:67769 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

27026658

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

52937691

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for xestoproxamine a, (rel)- (NP0241649)

MOL for NP0241649 (xestoproxamine a, (rel)-)

3D MOL for NP0241649 (xestoproxamine a, (rel)-)

3D SDF for NP0241649 (xestoproxamine a, (rel)-)

3D-SDF for NP0241649 (xestoproxamine a, (rel)-)

PDB for NP0241649 (xestoproxamine a, (rel)-)

3D PDB for NP0241649 (xestoproxamine a, (rel)-)

SMILES for NP0241649 (xestoproxamine a, (rel)-)

INCHI for NP0241649 (xestoproxamine a, (rel)-)

Structure for NP0241649 (xestoproxamine a, (rel)-)

3D Structure for NP0241649 (xestoproxamine a, (rel)-)