NP-MRD: Showing NP-Card for (2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid (NP0241436)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-07 01:31:12 UTC

Updated at

2022-09-07 01:31:12 UTC

NP-MRD ID

NP0241436

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid

Description

(2S)-2-{[(4S)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom. (2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid is found in Tricholomopsis rutilans. Based on a literature review very few articles have been published on (2S)-2-{[(4S)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 33  0  0  0  0  0  0  0  0999 V2000
    5.1550   -0.4974    1.5412 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0328    0.2152    0.9197 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1206    0.8041    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0110    1.5421   -0.2636 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2780    0.5305   -1.1244 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7613   -0.5325   -0.3274 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3626   -0.5178    0.2367 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6996   -1.6627    0.9832 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3014    0.5977    0.1536 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5393    0.2061   -0.5834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3246   -0.9064    0.0438 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4835   -1.1093   -0.8675 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8262   -0.5626    1.3951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0675   -0.4906    1.5718 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0196   -0.3162    2.4731 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2484   -0.0587   -2.1330 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8251    0.7102   -2.9438 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5078   -1.4129   -2.1766 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7795   -0.9780    0.7591 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8146   -1.3071    2.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7217    0.2156    2.1604 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2952    1.9147    0.4935 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4420    2.3574   -0.8418 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5065    1.0303   -1.7362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4324   -2.5912    0.6523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5628    0.9614    1.1949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    1.4568   -0.3931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2264    1.0813   -0.7500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2945   -0.1237   -1.6350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7798   -1.8511    0.0747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8098   -0.1478   -1.1030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0428   -1.5014   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2851    0.2597    3.2489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4064   -1.8171   -1.8910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  3  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 15  1  0
 13 14  2  0
  5 16  1  0
 16 18  1  0
 16 17  2  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  6
  8 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
 10 29  1  0
 11 30  1  1
 12 31  1  0
 12 32  1  0
 15 33  1  0
 18 34  1  0
M  END


  Mrv1652309072203312D          

 18 17  0  0  1  0            999 V2000
   -4.4783   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7638    0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9520    1.9520    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059   -0.5230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349   -0.5230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  3  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  2  0  0  0  0
  7  8  1  4  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  5 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0241436

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC#CC[C@H](N=C(O)CC[C@H](N)C(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H16N2O5/c1-2-3-4-8(11(17)18)13-9(14)6-5-7(12)10(15)16/h7-8H,4-6,12H2,1H3,(H,13,14)(H,15,16)(H,17,18)/t7-,8-/m0/s1

> <INCHI_KEY>
LOSQXYOWYFPTDX-YUMQZZPRSA-N

> <FORMULA>
C11H16N2O5

> <MOLECULAR_WEIGHT>
256.258

> <EXACT_MASS>
256.105921623

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
25.26913771188054

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-{[(4S)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid

> <JCHEM_LOGP>
-1.9945045459410573

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
3.823589806729885

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7718591877062337

> <JCHEM_PKA_STRONGEST_BASIC>
9.536142855284718

> <JCHEM_POLAR_SURFACE_AREA>
133.21

> <JCHEM_REFRACTIVITY>
62.19420000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-{[(4S)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -8.359  -0.206   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.026   0.564   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.692   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.358   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.025   1.334   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      -1.691   2.104   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -0.357  -0.206   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       3.644   3.644   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       6.311   2.104   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       4.977  -0.206   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -3.025  -0.206   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.691  -0.976   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      -4.358  -0.976   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   16                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    5   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol

Synonyms

Value	Source
(2S)-2-{[(4S)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoate	Generator

Chemical Formula

C₁₁H₁₆N₂O₅

Average Mass

256.2580 Da

Monoisotopic Mass

256.10592 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC#CC[C@H](N=C(O)CC[C@H](N)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C11H16N2O5/c1-2-3-4-8(11(17)18)13-9(14)6-5-7(12)10(15)16/h7-8H,4-6,12H2,1H3,(H,13,14)(H,15,16)(H,17,18)/t7-,8-/m0/s1

InChI Key

LOSQXYOWYFPTDX-YUMQZZPRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Tricholomopsis rutilans	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids

Alternative Parents

Substituents

N-acyl-alpha-amino acid
Alpha-amino acid
L-alpha-amino acid
Medium-chain fatty acid
Amino fatty acid
Dicarboxylic acid or derivatives
Unsaturated fatty acid
Fatty acyl
Fatty acid
Amino acid
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Organonitrogen compound
Organic oxide
Primary aliphatic amine
Organopnictogen compound
Amine
Organic nitrogen compound
Organooxygen compound
Primary amine
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163193438

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid (NP0241436)

MOL for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

3D MOL for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

3D SDF for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

3D-SDF for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

PDB for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

3D PDB for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

SMILES for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

INCHI for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

Structure for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)

3D Structure for NP0241436 ((2s)-2-{[(4s)-4-amino-4-carboxy-1-hydroxybutylidene]amino}hex-4-ynoic acid)