NP-MRD: Showing NP-Card for 5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid (NP0241399)

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Record Information

Version

2.0

Created at

2022-09-07 01:28:03 UTC

Updated at

2022-09-07 01:28:04 UTC

NP-MRD ID

NP0241399

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid

Description

5-Bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylic acid belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole. 5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid is found in Trachycladus laevispirulifer. Based on a literature review very few articles have been published on 5-bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 38  0  0  0  0  0  0  0  0999 V2000
   -3.5696   -1.3531   -2.2745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4355   -1.4473   -1.2726 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5585   -0.8140   -0.5745 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4487   -1.0262    0.8178 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3522   -1.7622    1.6985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2798   -0.3809    1.2393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9638    0.7051    0.2008 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5083    0.8075    0.1832 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2402    1.9791    0.2646 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7643    3.3405    0.5206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4753    3.5339    0.5609 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5761    4.4364    0.7298 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5574    1.6960    0.1692 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7604    0.3947    0.0240 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8589   -0.3820   -0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7264   -1.7459   -0.3185 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4907   -2.3022   -0.3259 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2147   -4.2049   -0.5277 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.3426   -1.5238   -0.1523 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4612   -0.1792    0.0283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5694    0.1642   -0.9734 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3356    0.4630   -2.3540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0912   -2.8260    1.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4024   -1.5303    1.5045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1571   -1.4397    2.7545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4624    0.2074    2.2197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4360   -1.0069    1.4158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4720    1.6038    0.4863 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2867    5.1784    1.3861 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3597    2.3771    0.1983 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8909    0.0130   -0.1380 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5761   -2.4157   -0.4349 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3691   -2.0221   -0.2034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5399   -0.5036   -2.9441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1111    1.1867   -2.7861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3232    0.7790   -2.6230 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  1  0
  4  6  1  0
  6  7  1  0
  7 21  1  0
 21 22  1  0
 21  3  1  0
  3  2  2  0
  7  8  1  0
  8  9  2  0
  9 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  2  0
  9 10  1  0
 10 12  1  0
 10 11  2  0
  3  4  1  0
 20  8  1  0
 20 14  1  0
  5 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  1
 22 34  1  0
 22 35  1  0
 22 36  1  0
  2  1  1  0
 13 30  1  0
 15 31  1  0
 16 32  1  0
 19 33  1  0
 12 29  1  0
M  END


  Mrv1652309072203282D          

 21 23  0  0  1  0            999 V2000
   -0.5683   -3.7149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0992   -3.2299    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0992   -2.4049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1712   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5837    0.0165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5837   -1.4124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -1.5229    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3687   -2.8174    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1937   -2.8174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -3.4849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -4.2695    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
  5 17  1  0  0  0  0
 11 17  1  0  0  0  0
  4 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
  2 20  1  0  0  0  0
 20 21  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0241399

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN1C[C@H](N(C)C1=N)C1=C(NC2=CC=C(Br)C=C12)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C14H15BrN4O2/c1-18-6-10(19(2)14(18)16)11-8-5-7(15)3-4-9(8)17-12(11)13(20)21/h3-5,10,16-17H,6H2,1-2H3,(H,20,21)/t10-/m0/s1

> <INCHI_KEY>
XXZWGZYBJMMHAS-JTQLQIEISA-N

> <FORMULA>
C14H15BrN4O2

> <MOLECULAR_WEIGHT>
351.204

> <EXACT_MASS>
350.037839

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
31.788646521486843

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylic acid

> <JCHEM_LOGP>
0.2548560666984301

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.007889512894003

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.841283488716683

> <JCHEM_PKA_STRONGEST_BASIC>
11.563772744651555

> <JCHEM_POLAR_SURFACE_AREA>
83.42000000000002

> <JCHEM_REFRACTIVITY>
94.1542

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.061  -6.934   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       0.185  -6.029   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0       0.185  -4.489   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.320  -1.303   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.090   0.031   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      -1.090  -2.637   0.000  0.00  0.00           O+0
HETATM   10  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   15 Br   UNK     0       7.591  -2.843   0.000  0.00  0.00          Br+0
HETATM   16  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0       2.555  -5.259   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       4.095  -5.259   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.650  -6.505   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       2.126  -7.970   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   18                                                  
CONECT    5    4    6   17                                                  
CONECT    6    5    7   10                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    6   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16    5   11                                                  
CONECT   18    4   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18    2   21                                                  
CONECT   21   20                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Value	Source
5-Bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylate	Generator

Chemical Formula

C₁₄H₁₅BrN₄O₂

Average Mass

351.2040 Da

Monoisotopic Mass

350.03784 Da

IUPAC Name

5-bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylic acid

Traditional Name

5-bromo-3-[(4R)-2-imino-1,3-dimethylimidazolidin-4-yl]-1H-indole-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

CN1C[C@H](N(C)C1=N)C1=C(NC2=CC=C(Br)C=C12)C(O)=O

InChI Identifier

InChI=1S/C14H15BrN4O2/c1-18-6-10(19(2)14(18)16)11-8-5-7(15)3-4-9(8)17-12(11)13(20)21/h3-5,10,16-17H,6H2,1-2H3,(H,20,21)/t10-/m0/s1

InChI Key

XXZWGZYBJMMHAS-JTQLQIEISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trachycladus laevispirulifer	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolecarboxylic acids and derivatives. Indolecarboxylic acids and derivatives are compounds containing a carboxylic acid group (or a derivative thereof) linked to an indole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indolecarboxylic acids and derivatives

Direct Parent

Indolecarboxylic acids and derivatives

Alternative Parents

Substituents

Indolecarboxylic acid derivative
3-alkylindole
Indole
Pyrrole-2-carboxylic acid
Pyrrole-2-carboxylic acid or derivatives
Benzenoid
Substituted pyrrole
Aryl bromide
Aryl halide
Heteroaromatic compound
Pyrrole
Imidazolidine
Guanidine
Azacycle
Carboxylic acid derivative
Carboximidamide
Monocarboxylic acid or derivatives
Carboxylic acid
Organic nitrogen compound
Organohalogen compound
Organobromide
Organonitrogen compound
Imine
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.25	ChemAxon
pKa (Strongest Acidic)	4.84	ChemAxon
pKa (Strongest Basic)	11.56	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	83.42 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	94.15 m³·mol⁻¹	ChemAxon
Polarizability	31.79 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163195670

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid (NP0241399)

MOL for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

3D MOL for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

3D SDF for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

3D-SDF for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

PDB for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

3D PDB for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

SMILES for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

INCHI for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

Structure for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)

3D Structure for NP0241399 (5-bromo-3-[(4r)-2-imino-1,3-dimethylimidazolidin-4-yl]-1h-indole-2-carboxylic acid)