NP-MRD: Showing NP-Card for homoedudiol (NP0241352)

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Record Information

Version

2.0

Created at

2022-09-07 01:24:36 UTC

Updated at

2022-09-07 01:24:36 UTC

NP-MRD ID

NP0241352

Secondary Accession Numbers

None

Natural Product Identification

Common Name

homoedudiol

Description

Sophorapterocarpan a belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Thus, sophorapterocarpan a is considered to be a flavonoid lipid molecule. homoedudiol is found in Erythrina abyssinica. Sophorapterocarpan a is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 47  0  0  0  0  0  0  0  0999 V2000
   -4.9792   -1.7772    0.2585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9932   -0.4340   -0.3638 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7858   -0.2073   -1.6059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3217    0.5875    0.1439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5182    0.3997    1.3835 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0797    0.7160    1.1337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1092   -0.2512    0.9869 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2017    0.1001    0.7585 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6134    1.4288    0.6649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3585    2.3960    0.8118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6704    2.0445    1.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6625    3.0223    1.1908 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9976    1.4797    0.4300 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5639    0.2544    0.9244 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8435   -0.0800    0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0186    0.5726    0.6242 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2404    0.3090    0.0440 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2951   -0.6466   -0.9485 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5309   -0.9016   -1.5240 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1352   -1.2931   -1.3159 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9058   -1.0352   -0.7394 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7514   -1.7082   -1.1347 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5071   -1.0667   -0.9086 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4576   -0.7076    0.5609 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4714   -2.5224   -0.4188 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5867   -1.8210    1.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9286   -2.0849    0.4319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0815   -1.1494   -2.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6786    0.3901   -1.3645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1628    0.4063   -2.2794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3393    1.5547   -0.3157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8817    1.0889    2.2007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6014   -0.6137    1.8009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4172   -1.2957    1.0579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0572    3.4467    0.7420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4156    3.9973    1.1317 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6678    0.3187    2.0172 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9251    1.3229    1.4150 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1150    0.8569    0.3830 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6097   -1.5955   -2.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1676   -2.0459   -2.0945 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4646   -0.1132   -1.4907 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6529   -1.7249   -1.1397 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4357   -1.6178    1.1652 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 13  1  0
 13 14  1  0
 14 24  1  0
 24 23  1  0
 23 22  1  0
 22 21  1  0
 21 20  2  0
 20 18  1  0
 18 19  1  0
 18 17  2  0
 17 16  1  0
 16 15  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 11  6  1  0
 24  8  1  0
 15 21  1  0
 15 14  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  3 28  1  0
  3 29  1  0
  3 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  7 34  1  0
 14 37  1  1
 24 44  1  1
 23 42  1  0
 23 43  1  0
 20 41  1  0
 19 40  1  0
 17 39  1  0
 16 38  1  0
 10 35  1  0
 12 36  1  0
M  END


  Mrv1533004241510442D          

 24 27  0  0  0  0            999 V2000
    0.1998   -0.9969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9331   -0.6188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6271   -1.0648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3604   -0.6867    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0545   -1.1327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7877   -0.7546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4818   -1.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2776   -0.9832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6486   -0.2464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4723   -0.1992    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9249   -0.8889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7486   -0.8418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2012   -1.5315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0249   -1.4844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8302   -2.2684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0066   -2.3156    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5539   -1.6258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7303   -1.6730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2142   -2.3166    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4426   -2.0247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7093   -2.4027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0152   -1.9568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2820   -2.3348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9723    0.2053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
  8 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  7 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
  5 22  1  0  0  0  0
 22 23  1  0  0  0  0
  2 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0241352

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1=CC2=C(OC3C2COC2=CC(O)=CC=C32)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C20H20O4/c1-11(2)3-4-12-7-15-16-10-23-18-8-13(21)5-6-14(18)20(16)24-19(15)9-17(12)22/h3,5-9,16,20-22H,4,10H2,1-2H3

> <INCHI_KEY>
AZLNYSCXKUKIRV-UHFFFAOYSA-N

> <FORMULA>
C20H20O4

> <MOLECULAR_WEIGHT>
324.376

> <EXACT_MASS>
324.136159124

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
35.9574871374778

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
13-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2,4,6,11(16),12,14-hexaene-5,14-diol

> <ALOGPS_LOGP>
3.81

> <JCHEM_LOGP>
4.0918963396666665

> <ALOGPS_LOGS>
-4.09

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.690920308651526

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.08649795593965

> <JCHEM_PKA_STRONGEST_BASIC>
-4.587390413489094

> <JCHEM_POLAR_SURFACE_AREA>
58.92

> <JCHEM_REFRACTIVITY>
92.8216

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.62e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
homoedudiol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       0.373  -1.861   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.742  -1.155   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.037  -1.988   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.406  -1.282   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.702  -2.114   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.070  -1.409   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.366  -2.241   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.852  -1.835   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.544  -0.460   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      12.082  -0.372   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      12.927  -1.659   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.464  -1.571   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.309  -2.859   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      16.846  -2.771   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      14.616  -4.234   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      13.079  -4.322   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.234  -3.035   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.697  -3.123   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       9.733  -4.324   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.293  -3.779   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.924  -4.485   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.628  -3.653   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       4.260  -4.358   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       1.815   0.383   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   22                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9   18                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18                                                  
CONECT   18   17    8   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19    7   21                                                  
CONECT   21   20   22                                                       
CONECT   22   21    5   23                                                  
CONECT   23   22                                                            
CONECT   24    2                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₀O₄

Average Mass

324.3760 Da

Monoisotopic Mass

324.13616 Da

IUPAC Name

13-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2,4,6,11(16),12,14-hexaene-5,14-diol

Traditional Name

homoedudiol

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=CC2=C(OC3C2COC2=CC(O)=CC=C32)C=C1O

InChI Identifier

InChI=1S/C20H20O4/c1-11(2)3-4-12-7-15-16-10-23-18-8-13(21)5-6-14(18)20(16)24-19(15)9-17(12)22/h3,5-9,16,20-22H,4,10H2,1-2H3

InChI Key

AZLNYSCXKUKIRV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Erythrina abyssinica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Furanoisoflavonoids

Direct Parent

Pterocarpans

Alternative Parents

Substituents

Isoflavanol
Pterocarpan
Isoflavan
Chromane
Benzopyran
1-benzopyran
Benzofuran
Coumaran
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Ether
Organoheterocyclic compound
Oxacycle
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Pterocarpans (LMPK12070008 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.81	ALOGPS
logP	4.09	ChemAxon
logS	-4.1	ALOGPS
pKa (Strongest Acidic)	9.09	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	58.92 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	92.82 m³·mol⁻¹	ChemAxon
Polarizability	35.96 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for homoedudiol (NP0241352)

MOL for NP0241352 (homoedudiol)

3D MOL for NP0241352 (homoedudiol)

3D SDF for NP0241352 (homoedudiol)

3D-SDF for NP0241352 (homoedudiol)

PDB for NP0241352 (homoedudiol)

3D PDB for NP0241352 (homoedudiol)

SMILES for NP0241352 (homoedudiol)

INCHI for NP0241352 (homoedudiol)

Structure for NP0241352 (homoedudiol)

3D Structure for NP0241352 (homoedudiol)