NP-MRD: Showing NP-Card for [(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate (NP0241311)

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Record Information

Version

2.0

Created at

2022-09-07 01:21:47 UTC

Updated at

2022-09-07 01:21:48 UTC

NP-MRD ID

NP0241311

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

Description

[(2R,3S,4S,5R,6R)-6-{[(1S,4R,5S,17R,19S,20R)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]Icosa-6,8,10,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones. [(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate is found in Eritrichium rupestre. Based on a literature review very few articles have been published on [(2R,3S,4S,5R,6R)-6-{[(1S,4R,5S,17R,19S,20R)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]Icosa-6,8,10,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072203212D          

 54 59  0  0  1  0            999 V2000
    6.3425    5.3725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0759    4.5918    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2664    4.4323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7236    5.0536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9142    4.8941    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6475    4.1134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8381    3.9539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2953    4.5752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1903    3.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9237    2.7114    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4665    2.0901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1999    1.3094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7427    0.6881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5522    0.8476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0950    0.2263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8283   -0.5544    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8188    1.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6282    1.7878    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2760    2.2496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5426    3.0303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1955    0.8593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8476    1.7712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3905    1.1499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1390    0.8032    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1238    0.3692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3144    0.2098    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7716    0.8310    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9525    0.9295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7930    1.7389    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0136    1.4685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1419    0.6583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4168    2.4732    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4072    2.5145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8549    1.8215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6789    1.8628    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -2.1982   -0.2572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8219   -0.9915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0221   -0.2159    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0551    2.5971    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8791    2.6384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6074    3.2900    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9836    4.0242    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7834    3.2487    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3356    3.9416    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4954    2.2330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7620    3.0137    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5715    3.1732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3283    3.9615    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1143    2.5519    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0382    1.6118    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5993    2.2165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9998    3.6516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 11 19  1  0  0  0  0
 19 20  1  0  0  0  0
 12 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  1  6  0  0  0
 30 31  1  0  0  0  0
 29 32  1  1  0  0  0
 33 32  1  1  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  6  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  2  0  0  0  0
 35 41  1  0  0  0  0
 41 42  1  1  0  0  0
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 43 44  1  6  0  0  0
 43 45  1  0  0  0  0
 33 45  1  0  0  0  0
 45 46  1  1  0  0  0
 29 47  1  0  0  0  0
 47 48  1  1  0  0  0
 48 49  1  0  0  0  0
 49 50  2  0  0  0  0
 49 51  1  0  0  0  0
 51 22  1  6  0  0  0
 10 51  1  0  0  0  0
 47 52  1  0  0  0  0
 27 52  1  0  0  0  0
 52 53  1  6  0  0  0
  9 54  2  0  0  0  0
  3 54  1  0  0  0  0
M  END

     RDKit          3D

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   -3.6925   -0.2077    0.0276 C   0  0  1  0  0  0  0  0  0  0  0  0
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    7.6428    4.2166   -0.5956 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.8021    1.5097    2.4105 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7876    2.8739    2.3498 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7838   -0.4538    0.8915 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1941    0.3670    1.1407 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2596    0.5984    1.9562 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8270   -3.8080   -1.3358 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9802   -1.8765    2.7850 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6085   -0.2548    1.3302 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8977   -1.5173   -2.3559 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  6  9  1  0
  9 54  2  0
  9 10  1  0
 10 51  1  0
 51 22  1  0
 22 21  2  0
 21 12  1  0
 12 11  2  0
 11 19  1  0
 19 20  1  0
 19 17  2  0
 17 18  1  0
 17 14  1  0
 14 15  1  0
 15 16  1  0
 14 13  2  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 29 32  1  1
 32 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  1  0
 38 39  1  0
 38 40  2  0
 35 41  1  0
 41 42  1  0
 41 43  1  0
 43 44  1  0
 43 45  1  0
 45 46  1  0
 29 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  2  0
 47 52  1  0
 52 53  1  0
 54  3  1  0
 11 10  1  0
 52 27  1  0
 49 51  1  0
 13 12  1  0
 45 33  1  0
  1 55  1  0
  1 56  1  0
  1 57  1  0
  4 58  1  0
  5 59  1  0
  8 60  1  0
  8 61  1  0
  8 62  1  0
 54 94  1  0
 10 63  1  1
 51 91  1  6
 21 70  1  0
 20 69  1  0
 18 68  1  0
 16 65  1  0
 16 66  1  0
 16 67  1  0
 13 64  1  0
 26 71  1  0
 26 72  1  0
 27 73  1  1
 30 74  1  0
 30 75  1  0
 31 76  1  0
 33 77  1  1
 35 78  1  1
 36 79  1  0
 36 80  1  0
 39 81  1  0
 39 82  1  0
 39 83  1  0
 41 84  1  6
 42 85  1  0
 43 86  1  1
 44 87  1  0
 45 88  1  1
 46 89  1  0
 47 90  1  1
 52 92  1  6
 53 93  1  0
M  END


  Mrv1652309072203212D          

 54 59  0  0  1  0            999 V2000
    6.3425    5.3725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0759    4.5918    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2664    4.4323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7236    5.0536    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9142    4.8941    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6475    4.1134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8381    3.9539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2953    4.5752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1903    3.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9237    2.7114    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4665    2.0901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1999    1.3094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7427    0.6881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5522    0.8476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0950    0.2263    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8283   -0.5544    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8188    1.6283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6282    1.7878    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2760    2.2496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5426    3.0303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1955    0.8593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8476    1.7712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3905    1.1499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1390    0.8032    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1238    0.3692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3144    0.2098    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7716    0.8310    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9525    0.9295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7930    1.7389    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0136    1.4685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1419    0.6583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4168    2.4732    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4072    2.5145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8549    1.8215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6789    1.8628    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1266    1.1699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7504    0.4357    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1982   -0.2572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8219   -0.9915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0221   -0.2159    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0551    2.5971    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8791    2.6384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6074    3.2900    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9836    4.0242    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7834    3.2487    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3356    3.9416    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4954    2.2330    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7620    3.0137    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5715    3.1732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3283    3.9615    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1143    2.5519    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0382    1.6118    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5993    2.2165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9998    3.6516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 11 19  1  0  0  0  0
 19 20  1  0  0  0  0
 12 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  1  6  0  0  0
 30 31  1  0  0  0  0
 29 32  1  1  0  0  0
 33 32  1  1  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  6  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  2  0  0  0  0
 35 41  1  0  0  0  0
 41 42  1  1  0  0  0
 41 43  1  0  0  0  0
 43 44  1  6  0  0  0
 43 45  1  0  0  0  0
 33 45  1  0  0  0  0
 45 46  1  1  0  0  0
 29 47  1  0  0  0  0
 47 48  1  1  0  0  0
 48 49  1  0  0  0  0
 49 50  2  0  0  0  0
 49 51  1  0  0  0  0
 51 22  1  6  0  0  0
 10 51  1  0  0  0  0
 47 52  1  0  0  0  0
 27 52  1  0  0  0  0
 52 53  1  6  0  0  0
  9 54  2  0  0  0  0
  3 54  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0241311

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(OC)C(=C1)[C@@H]1[C@@H]2C(=CC3=C1C(O)=C(O)C(OC)=C3)C(=O)OC[C@H]1O[C@@](CO)(O[C@H]3O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]3O)[C@@H](OC2=O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C35H40O19/c1-13(37)49-10-20-26(39)29(42)30(43)34(51-20)54-35(12-36)31-27(40)21(53-35)11-50-32(44)17-7-14-8-19(48-4)25(38)28(41)22(14)23(24(17)33(45)52-31)16-9-15(46-2)5-6-18(16)47-3/h5-9,20-21,23-24,26-27,29-31,34,36,38-43H,10-12H2,1-4H3/t20-,21-,23+,24+,26-,27-,29+,30-,31+,34-,35+/m1/s1

> <INCHI_KEY>
IZLRSYIJFYFBRU-ANWQJWFLSA-N

> <FORMULA>
C35H40O19

> <MOLECULAR_WEIGHT>
764.686

> <EXACT_MASS>
764.216379068

> <JCHEM_ACCEPTOR_COUNT>
16

> <JCHEM_ATOM_COUNT>
94

> <JCHEM_AVERAGE_POLARIZABILITY>
73.01501421169436

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R,3S,4S,5R,6R)-6-{[(1S,4R,5S,17R,19S,20R)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0^{4,13}.0^{6,11}]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

> <JCHEM_LOGP>
-0.3806785926666676

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.045214151441865

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.21754486137185

> <JCHEM_PKA_STRONGEST_BASIC>
-3.456550487281209

> <JCHEM_POLAR_SURFACE_AREA>
275.88999999999993

> <JCHEM_REFRACTIVITY>
175.83210000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4S,5R,6R)-6-{[(1S,4R,5S,17R,19S,20R)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0^{4,13}.0^{6,11}]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      11.839  10.029   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      11.342   8.571   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       9.831   8.274   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.817   9.433   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.306   9.136   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.809   7.678   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       5.298   7.381   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.285   8.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.822   6.519   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.324   5.061   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.338   3.902   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.840   2.444   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.853   1.284   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.364   1.582   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      11.377   0.422   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.880  -1.035   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.862   3.040   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      12.373   3.337   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       9.848   4.199   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      10.346   5.657   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       5.965   1.604   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.316   3.306   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.329   2.147   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.726   1.499   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       5.831   0.689   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       4.320   0.392   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.307   1.551   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       1.778   1.735   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       1.480   3.246   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.025   2.741   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -0.265   1.229   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       0.778   4.617   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -0.760   4.694   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -1.596   3.400   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -3.134   3.477   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -3.970   2.184   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      -3.267   0.813   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      -4.103  -0.480   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -3.401  -1.851   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -5.641  -0.403   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -3.836   4.848   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -5.374   4.925   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -3.000   6.141   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -3.703   7.512   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -1.462   6.064   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      -0.627   7.358   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0       2.791   4.168   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0       3.289   5.626   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0       4.800   5.923   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0       4.346   7.395   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0       5.813   4.764   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       3.805   3.009   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0       4.852   4.138   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0       9.333   6.816   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   54                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    6   10   54                                                  
CONECT   10    9   11   51                                                  
CONECT   11   10   12   19                                                  
CONECT   12   11   13   21                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   11   20                                                  
CONECT   20   19                                                            
CONECT   21   12   22                                                       
CONECT   22   21   23   51                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   52                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30   32   47                                             
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   29   33                                                       
CONECT   33   32   34   45                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   41                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41   35   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   33   46                                                  
CONECT   46   45                                                            
CONECT   47   29   48   52                                                  
CONECT   48   47   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   22   10                                                  
CONECT   52   47   27   53                                                  
CONECT   53   52                                                            
CONECT   54    9    3                                                       
MASTER        0    0    0    0    0    0    0    0   54    0  118    0
END

View in JSmol

Synonyms

Value	Source
[(2R,3S,4S,5R,6R)-6-{[(1S,4R,5S,17R,19S,20R)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0,.0,]icosa-6,8,10,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetic acid	Generator

Chemical Formula

C₃₅H₄₀O₁₉

Average Mass

764.6860 Da

Monoisotopic Mass

764.21638 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

COC1=CC=C(OC)C(=C1)[C@@H]1[C@@H]2C(=CC3=C1C(O)=C(O)C(OC)=C3)C(=O)OC[C@H]1O[C@@](CO)(O[C@H]3O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]3O)[C@@H](OC2=O)[C@@H]1O

InChI Identifier

InChI=1S/C35H40O19/c1-13(37)49-10-20-26(39)29(42)30(43)34(51-20)54-35(12-36)31-27(40)21(53-35)11-50-32(44)17-7-14-8-19(48-4)25(38)28(41)22(14)23(24(17)33(45)52-31)16-9-15(46-2)5-6-18(16)47-3/h5-9,20-21,23-24,26-27,29-31,34,36,38-43H,10-12H2,1-4H3/t20-,21-,23+,24+,26-,27-,29+,30-,31+,34-,35+/m1/s1

InChI Key

IZLRSYIJFYFBRU-ANWQJWFLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eritrichium rupestre	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Lignan glycosides

Sub Class

Not Available

Direct Parent

Lignan glycosides

Alternative Parents

Substituents

Lignan glycoside
Lignan lactone
1-aryltetralin lignan
O-glycosyl compound
Glycosyl compound
Disaccharide
Naphthalene
Dimethoxybenzene
P-dimethoxybenzene
Tricarboxylic acid or derivatives
Anisole
Phenoxy compound
Phenol ether
Methoxybenzene
Ketal
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
Oxane
Benzenoid
Monocyclic benzene moiety
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Lactone
Secondary alcohol
Carboxylic acid ester
Acetal
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Ether
Polyol
Alcohol
Carbonyl group
Organic oxygen compound
Organic oxide
Primary alcohol
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.38	ChemAxon
pKa (Strongest Acidic)	9.22	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	16	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	275.89 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	175.83 m³·mol⁻¹	ChemAxon
Polarizability	73.02 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9875288

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11700563

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate (NP0241311)

MOL for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

3D MOL for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

3D SDF for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

3D-SDF for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

PDB for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

3D PDB for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

SMILES for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

INCHI for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

Structure for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)

3D Structure for NP0241311 ([(2r,3s,4s,5r,6r)-6-{[(1s,4r,5s,17r,19s,20r)-5-(2,5-dimethoxyphenyl)-7,8,20-trihydroxy-19-(hydroxymethyl)-9-methoxy-3,14-dioxo-2,15,18-trioxatetracyclo[15.2.1.0⁴,¹³.0⁶,¹¹]icosa-6(11),7,9,12-tetraen-19-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate)