NP-MRD: Showing NP-Card for (5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one (NP0241246)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-07 01:16:31 UTC

Updated at

2022-09-07 01:16:31 UTC

NP-MRD ID

NP0241246

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one

Description

Palinurin belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. (5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one is found in Ircinia variabilis. (5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one was first documented in 2003 (PMID: 12918917). Based on a literature review a small amount of articles have been published on palinurin (PMID: 23354070) (PMID: 21281991) (PMID: 19587930) (PMID: 12678872).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072203162D          

 29 30  0  0  1  0            999 V2000
    5.0304   -6.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0304   -7.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6978   -8.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4825   -7.8808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4429   -8.9204    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9278   -9.5878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7483   -9.5016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0839   -8.7479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2332  -10.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0537  -10.0828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3893   -9.3291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2097   -9.2429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6947   -9.9103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5453   -8.4892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3658   -8.4030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7013   -7.6493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5218   -7.5631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0067   -8.2305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8574   -6.8094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6779   -6.7232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0134   -5.9695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8339   -5.8833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2464   -5.1688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0534   -5.3403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1396   -6.1608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3859   -6.4963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6179   -8.9204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3630   -8.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5783   -7.8808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 22 26  2  0  0  0  0
  5 27  1  0  0  0  0
 27 28  1  0  0  0  0
  2 28  1  0  0  0  0
 28 29  2  0  0  0  0
M  END

     RDKit          3D

 63 64  0  0  0  0  0  0  0  0999 V2000
   -8.9479    1.3253    2.6435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9051    0.6762    1.7731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7721    0.7797    0.4772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6019    1.5184   -0.3517 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6193    0.0082   -0.0005 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6389    1.0112   -0.5457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3475    0.4973   -0.9864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3252   -0.3949   -2.1830 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1640    0.8007   -0.4714 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8840    0.2983   -1.0412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1671   -0.6882   -0.1936 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1436   -1.0624   -0.9261 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2065   -1.6313   -2.3086 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9631    0.1334   -1.1358 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1438    0.3276   -0.6710 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3846    0.5321   -0.1827 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9948   -0.4405    0.5512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2390   -1.6858    0.7695 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3437   -0.2435    1.0578 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1973   -1.3553    0.4335 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6119   -1.1975    0.9109 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1300    0.1211    0.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7265    0.4477   -0.7005 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0324    1.8011   -0.6227 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6514    2.2225    0.5334 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1155    1.2780    1.2419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0670   -0.5816    1.1328 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8259   -0.1902    2.2259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6740   -0.4913    3.4591 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7980    1.6559    2.0390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2208    0.7281    3.5208 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4834    2.2792    3.0414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2666    2.0110   -1.1714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9075   -0.7475   -0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1770    1.5035   -1.4107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5699    1.8189    0.2362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9896    0.1523   -3.0883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6372   -1.2228   -1.9937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3420   -0.7818   -2.4185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1772    1.4465    0.3995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2221    1.2116   -1.0914 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9726   -0.0530   -2.0662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8126   -0.1485    0.7304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7025   -1.5897    0.0719 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6134   -1.8692   -0.3812 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5104   -2.4308   -2.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0608   -0.8309   -3.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2209   -2.0083   -2.2994 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6390    0.9056   -1.8118 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9432    1.6793   -0.8336 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0555    1.4066   -0.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8635   -2.4171    1.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3314   -1.4861    1.3713 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9955   -2.0897   -0.2490 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3397   -0.3139    2.1617 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7684    0.7303    0.7192 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2083   -1.2298   -0.6773 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7896   -2.3509    0.6684 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2483   -2.0135    0.4970 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5968   -1.3144    2.0223 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9068   -0.2240   -1.5323 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5010    2.3826   -1.3927 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7189    1.3938    2.2499 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  7  2  0
  7  8  1  0
  7  6  1  0
  6  5  1  0
  5 27  1  0
 27 28  1  0
 28 29  2  0
 28  2  1  0
  2  1  1  0
  2  3  2  0
  3  4  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 26  2  0
 26 25  1  0
 25 24  1  0
 24 23  2  0
  3  5  1  0
 23 22  1  0
 13 46  1  0
 13 47  1  0
 13 48  1  0
 12 45  1  1
 11 43  1  0
 11 44  1  0
 10 41  1  0
 10 42  1  0
  9 40  1  0
  8 37  1  0
  8 38  1  0
  8 39  1  0
  6 35  1  0
  6 36  1  0
  5 34  1  6
  1 30  1  0
  1 31  1  0
  1 32  1  0
  4 33  1  0
 14 49  1  0
 15 50  1  0
 16 51  1  0
 18 52  1  0
 18 53  1  0
 18 54  1  0
 19 55  1  0
 19 56  1  0
 20 57  1  0
 20 58  1  0
 21 59  1  0
 21 60  1  0
 26 63  1  0
 24 62  1  0
 23 61  1  0
M  END


  Mrv1652309072203162D          

 29 30  0  0  1  0            999 V2000
    5.0304   -6.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0304   -7.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6978   -8.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4825   -7.8808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4429   -8.9204    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9278   -9.5878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7483   -9.5016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0839   -8.7479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2332  -10.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0537  -10.0828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3893   -9.3291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2097   -9.2429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6947   -9.9103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5453   -8.4892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3658   -8.4030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7013   -7.6493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5218   -7.5631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0067   -8.2305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8574   -6.8094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6779   -6.7232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0134   -5.9695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8339   -5.8833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2464   -5.1688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0534   -5.3403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1396   -6.1608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.3859   -6.4963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6179   -8.9204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3630   -8.1358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5783   -7.8808    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 22 26  2  0  0  0  0
  5 27  1  0  0  0  0
 27 28  1  0  0  0  0
  2 28  1  0  0  0  0
 28 29  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0241246

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CC\C=C(/C)C[C@H]1OC(=O)C(C)=C1O)\C=C\C=C(/C)CCCC1=COC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C25H34O4/c1-18(8-5-9-19(2)11-7-13-22-14-15-28-17-22)10-6-12-20(3)16-23-24(26)21(4)25(27)29-23/h5,8-9,12,14-15,17-18,23,26H,6-7,10-11,13,16H2,1-4H3/b8-5+,19-9+,20-12+/t18?,23-/m1/s1

> <INCHI_KEY>
UXFNAATUJSSAHF-SZWANQOLSA-N

> <FORMULA>
C25H34O4

> <MOLECULAR_WEIGHT>
398.543

> <EXACT_MASS>
398.245709575

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
46.993918970475285

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5R)-5-[(2E,7E,9E)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-2,5-dihydrofuran-2-one

> <JCHEM_LOGP>
6.497266741333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.104065733460335

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.831021652606984

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7839229584296166

> <JCHEM_POLAR_SURFACE_AREA>
59.67000000000001

> <JCHEM_REFRACTIVITY>
120.7224

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(5R)-5-[(2E,7E,9E)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5H-furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       9.390 -12.742   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.390 -14.282   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.636 -15.187   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      12.101 -14.711   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      10.160 -16.651   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.065 -17.897   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.597 -17.736   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.223 -16.329   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.502 -18.982   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      15.034 -18.821   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      15.660 -17.414   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      17.192 -17.253   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      18.097 -18.499   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.818 -15.847   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      19.349 -15.686   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      19.976 -14.279   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      21.507 -14.118   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      22.413 -15.364   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      22.134 -12.711   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      23.665 -12.550   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      24.292 -11.143   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      25.823 -10.982   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      26.593  -9.648   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      28.100  -9.969   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      28.261 -11.500   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      26.854 -12.127   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       8.620 -16.651   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.144 -15.187   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       6.680 -14.711   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   28                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   27                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   26                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   22                                                       
CONECT   27    5   28                                                       
CONECT   28   27    2   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₄O₄

Average Mass

398.5430 Da

Monoisotopic Mass

398.24571 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(CC\C=C(/C)C[C@H]1OC(=O)C(C)=C1O)\C=C\C=C(/C)CCCC1=COC=C1

InChI Identifier

InChI=1S/C25H34O4/c1-18(8-5-9-19(2)11-7-13-22-14-15-28-17-22)10-6-12-20(3)16-23-24(26)21(4)25(27)29-23/h5,8-9,12,14-15,17-18,23,26H,6-7,10-11,13,16H2,1-4H3/b8-5+,19-9+,20-12+/t18?,23-/m1/s1

InChI Key

UXFNAATUJSSAHF-SZWANQOLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ircinia variabilis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Diterpene lactones

Alternative Parents

Substituents

Diterpene lactone
Diterpenoid
2-furanone
Dihydrofuran
Heteroaromatic compound
Vinylogous acid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Furan
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Enol
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organooxygen compound
Organic oxide
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00039924

Chemspider ID

24692266

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

54726684

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Bidon-Chanal A, Fuertes A, Alonso D, Perez DI, Martinez A, Luque FJ, Medina M: Evidence for a new binding mode to GSK-3: allosteric regulation by the marine compound palinurin. Eur J Med Chem. 2013 Feb;60:479-89. doi: 10.1016/j.ejmech.2012.12.014. Epub 2012 Dec 16. [PubMed:23354070 ]
Ermondi G, Caron G, Pintos IG, Gerbaldo M, Perez M, Perez DI, Gandara Z, Martinez A, Gomez G, Fall Y: An application of two MIFs-based tools (Volsurf+ and Pentacle) to binary QSAR: the case of a palinurin-related data set of non-ATP competitive glycogen synthase kinase 3beta (GSK-3beta) inhibitors. Eur J Med Chem. 2011 Mar;46(3):860-9. doi: 10.1016/j.ejmech.2010.12.024. Epub 2011 Jan 9. [PubMed:21281991 ]
Perez M, Perez DI, Martinez A, Castro A, Gomez G, Fall Y: The first enantioselective synthesis of palinurin. Chem Commun (Camb). 2009 Jun 14;(22):3252-4. doi: 10.1039/b822679b. Epub 2009 May 5. [PubMed:19587930 ]
Marti R, Fontana A, Uriz MJ, Cimino G: Quantitative assessment of natural toxicity in sponges: toxicity bioassay versus compound quantification. J Chem Ecol. 2003 Jun;29(6):1307-18. doi: 10.1023/a:1024201100811. [PubMed:12918917 ]
Hamann MT: Enhancing marine natural product structural diversity and bioactivity through semisynthesis and biocatalysis. Curr Pharm Des. 2003;9(11):879-89. doi: 10.2174/1381612033455297. [PubMed:12678872 ]
LOTUS database [Link]

Showing NP-Card for (5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one (NP0241246)

MOL for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

3D MOL for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

3D SDF for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

3D-SDF for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

PDB for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

3D PDB for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

SMILES for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

INCHI for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

Structure for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)

3D Structure for NP0241246 ((5r)-5-[(2e,7e,9e)-13-(furan-3-yl)-2,6,10-trimethyltrideca-2,7,9-trien-1-yl]-4-hydroxy-3-methyl-5h-furan-2-one)