NP-MRD: Showing NP-Card for (1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate (NP0240955)

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Record Information

Version

2.0

Created at

2022-09-07 00:53:58 UTC

Updated at

2022-09-07 00:53:59 UTC

NP-MRD ID

NP0240955

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate

Description

Pectinolide H belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. (1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate was first documented in 2005 (PMID: 15770552). Based on a literature review very few articles have been published on Pectinolide H.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 39  0  0  0  0  0  0  0  0999 V2000
    2.4046   -2.2985   -1.0865 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5484   -2.2845    0.1798 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2402   -1.4806    1.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4681   -0.0586    0.8042 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1660    0.6601    0.4934 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2847    0.7510    1.6621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0170    0.7288    1.5262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6864    0.6139    0.2251 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8217    1.8527   -0.4184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1426    0.1322    0.3954 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1601   -1.2159    0.9523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6669   -2.0275    0.0495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0086   -1.2733   -1.1391 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5232   -1.7683   -2.2026 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6761    0.0391   -0.8943 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4799    2.0044    0.0951 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2754    2.4909   -1.1655 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6159    3.8972   -1.5317 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7950    1.7640   -2.0474 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1777   -1.4057   -1.7052 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1452   -3.2019   -1.6840 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4667   -2.3509   -0.7847 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678   -1.8685   -0.1110 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4202   -3.3221    0.5050 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6724   -1.5186    2.1816 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2259   -1.9358    1.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0078    0.5242    1.5770 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0925   -0.0679   -0.1124 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7385    0.1643   -0.3839 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7080    0.8374    2.6481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6961    0.7978    2.4065 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2419   -0.1090   -0.4712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6589    1.9509   -0.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6847    0.8658    1.0343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8053   -1.4883    1.9590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7986   -3.0887    0.1937 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6159    3.8993   -2.0002 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6000    4.5512   -0.6267 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8711    4.2394   -2.2908 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 15  1  0
 15 13  1  0
 13 14  2  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  2 24  1  0
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  5 29  1  6
 18 37  1  0
 18 38  1  0
 18 39  1  0
  6 30  1  0
  7 31  1  0
  8 32  1  6
  9 33  1  0
 10 34  1  1
 12 36  1  0
 11 35  1  0
M  END


  Mrv1652309072202542D          

 19 19  0  0  1  0            999 V2000
    0.5379   -2.7690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5379   -3.5940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2523   -4.0065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2523   -4.8315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9668   -5.2440    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9668   -6.0690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6813   -6.4815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3958   -6.0690    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3958   -5.2440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1102   -6.4815    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8639   -6.1460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4159   -6.7591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0034   -7.4735    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3390   -8.2272    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1965   -7.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6813   -4.8315    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6813   -4.0065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9668   -3.5940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3958   -3.5940    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
 10  8  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 10 15  1  0  0  0  0
  5 16  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0240955

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC[C@H](OC(C)=O)\C=C/[C@H](O)[C@H]1OC(=O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C14H20O5/c1-3-4-5-11(18-10(2)15)6-7-12(16)13-8-9-14(17)19-13/h6-9,11-13,16H,3-5H2,1-2H3/b7-6-/t11-,12-,13-/m0/s1

> <INCHI_KEY>
MHFMZMUZMCAZGK-MGTGEQGZSA-N

> <FORMULA>
C14H20O5

> <MOLECULAR_WEIGHT>
268.309

> <EXACT_MASS>
268.131073744

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
28.18754100165318

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2Z,4S)-1-hydroxy-1-[(2S)-5-oxo-2,5-dihydrofuran-2-yl]oct-2-en-4-yl acetate

> <JCHEM_LOGP>
2.0725215379999993

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.425831212653694

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.967916709700242

> <JCHEM_PKA_STRONGEST_BASIC>
-3.35156195073255

> <JCHEM_POLAR_SURFACE_AREA>
72.83000000000001

> <JCHEM_REFRACTIVITY>
70.7873

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2Z,4S)-1-hydroxy-1-[(2S)-5-oxo-2H-furan-2-yl]oct-2-en-4-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       1.004  -5.169   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.004  -6.709   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.338  -7.479   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.338  -9.019   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.671  -9.789   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.671 -11.329   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.005 -12.099   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.339 -11.329   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       6.339  -9.789   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       7.672 -12.099   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.079 -11.472   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.110 -12.617   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.340 -13.951   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       9.966 -15.357   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       7.833 -13.630   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       5.005  -9.019   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.005  -7.479   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.671  -6.709   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.339  -6.709   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   16                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   10                                                       
CONECT   16    5   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₂₀O₅

Average Mass

268.3090 Da

Monoisotopic Mass

268.13107 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CCCC[C@H](OC(C)=O)\C=C/[C@H](O)[C@H]1OC(=O)C=C1

InChI Identifier

InChI=1S/C14H20O5/c1-3-4-5-11(18-10(2)15)6-7-12(16)13-8-9-14(17)19-13/h6-9,11-13,16H,3-5H2,1-2H3/b7-6-/t11-,12-,13-/m0/s1

InChI Key

MHFMZMUZMCAZGK-MGTGEQGZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
2-furanone
Dicarboxylic acid or derivatives
Dihydrofuran
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Carboxylic acid ester
Lactone
Secondary alcohol
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organooxygen compound
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9324950

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11149842

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Fragoso-Serrano M, Gibbons S, Pereda-Miranda R: Anti-staphylococcal and cytotoxic compounds from Hyptis pectinata. Planta Med. 2005 Mar;71(3):278-80. doi: 10.1055/s-2005-837831. [PubMed:15770552 ]
LOTUS database [Link]

Showing NP-Card for (1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate (NP0240955)

MOL for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

3D MOL for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

3D SDF for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

3D-SDF for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

PDB for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

3D PDB for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

SMILES for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

INCHI for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

Structure for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)

3D Structure for NP0240955 ((1s,2z,4s)-1-hydroxy-1-[(2s)-5-oxo-2h-furan-2-yl]oct-2-en-4-yl acetate)