NP-MRD: Showing NP-Card for (2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol (NP0240947)

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Record Information

Version

2.0

Created at

2022-09-07 00:53:27 UTC

Updated at

2022-09-07 00:53:28 UTC

NP-MRD ID

NP0240947

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol

Description

(2R,3S,4S,5S,6R)-2-(4-{[(3R,4R,5S)-5-(3,5-dimethoxy-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones. (2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol is found in Parsonsia alboflavescens. Based on a literature review very few articles have been published on (2R,3S,4S,5S,6R)-2-(4-{[(3R,4R,5S)-5-(3,5-dimethoxy-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072202532D          

 50 54  0  0  1  0            999 V2000
   -1.3222    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222   -0.0616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0367   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0367   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -1.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -2.5366    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0837   -3.0215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3387   -3.8062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1637   -3.8062    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6486   -4.4736    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3130   -5.2273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4926   -5.3135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1570   -6.0672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3365   -6.1534    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
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  9 10  1  6  0  0  0
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 22 23  1  6  0  0  0
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 24 25  1  1  0  0  0
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 16 28  1  0  0  0  0
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 29 30  1  0  0  0  0
 28 31  2  0  0  0  0
 11 31  1  0  0  0  0
  9 32  1  0  0  0  0
  6 32  1  0  0  0  0
 32 33  1  6  0  0  0
 33 34  1  0  0  0  0
  5 35  2  0  0  0  0
 35 36  1  0  0  0  0
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 36 39  2  0  0  0  0
  3 39  1  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  6  0  0  0
 41 42  1  0  0  0  0
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 43 44  1  1  0  0  0
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 45 47  1  0  0  0  0
 47 48  1  1  0  0  0
 47 49  1  0  0  0  0
 41 49  1  0  0  0  0
 49 50  1  1  0  0  0
M  END

     RDKit          3D

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 41 88  1  1
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 31 79  1  0
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 22 70  1  6
 23 71  1  0
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 25 73  1  0
 26 74  1  6
 27 75  1  0
M  END


  Mrv1652309072202532D          

 50 54  0  0  1  0            999 V2000
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   -3.1637   -3.8062    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -3.3130   -5.2273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.0010   -6.9071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6419   -6.7346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.6118   -8.0695    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0967   -8.7369    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9172   -8.6507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7611   -9.4906    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2461  -10.1580    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9407   -9.5768    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6051  -10.3305    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4557   -8.9094    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6353   -8.9956    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4624   -6.6484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9473   -7.3158    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7678   -7.2296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7980   -5.8947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4186   -3.0215    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2032   -2.7666    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3748   -1.9596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4656   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4656   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801   -0.0616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8946   -0.4741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4656    1.1759    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1801    0.7634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8946    1.1759    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6091    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8946    2.0009    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6091    2.4134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801    2.4134    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1801    3.2384    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4656    2.0009    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7512    2.4134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  2  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  6  0  0  0
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 20 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
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 18 26  1  0  0  0  0
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 29 30  1  0  0  0  0
 28 31  2  0  0  0  0
 11 31  1  0  0  0  0
  9 32  1  0  0  0  0
  6 32  1  0  0  0  0
 32 33  1  6  0  0  0
 33 34  1  0  0  0  0
  5 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 36 39  2  0  0  0  0
  3 39  1  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  6  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  1  0  0  0
 43 45  1  0  0  0  0
 45 46  1  6  0  0  0
 45 47  1  0  0  0  0
 47 48  1  1  0  0  0
 47 49  1  0  0  0  0
 41 49  1  0  0  0  0
 49 50  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0240947

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(C[C@H]2CO[C@@H]([C@H]2CO)C2=CC(OC)=C(O[C@@H]3O[C@@H](C)[C@H](O)[C@@H](O)[C@H]3O)C(OC)=C2)=CC(OC)=C1O[C@H]1O[C@H](C)[C@@H](O)[C@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C34H48O16/c1-14-24(36)26(38)28(40)33(47-14)49-31-20(42-3)8-16(9-21(31)43-4)7-18-13-46-30(19(18)12-35)17-10-22(44-5)32(23(11-17)45-6)50-34-29(41)27(39)25(37)15(2)48-34/h8-11,14-15,18-19,24-30,33-41H,7,12-13H2,1-6H3/t14-,15+,18+,19+,24-,25+,26+,27-,28+,29-,30-,33-,34+/m1/s1

> <INCHI_KEY>
JRXDFKKGTNYPDG-LYWRRTTASA-N

> <FORMULA>
C34H48O16

> <MOLECULAR_WEIGHT>
712.742

> <EXACT_MASS>
712.294235466

> <JCHEM_ACCEPTOR_COUNT>
16

> <JCHEM_ATOM_COUNT>
98

> <JCHEM_AVERAGE_POLARIZABILITY>
73.27757816376666

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S,5S,6R)-2-(4-{[(3R,4R,5S)-5-(3,5-dimethoxy-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol

> <JCHEM_LOGP>
-0.45234846966666686

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.443570953121988

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.91217724193509

> <JCHEM_PKA_STRONGEST_BASIC>
-2.639333518651269

> <JCHEM_POLAR_SURFACE_AREA>
224.67999999999995

> <JCHEM_REFRACTIVITY>
171.32140000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4S,5S,6R)-2-(4-{[(3R,4R,5S)-5-(3,5-dimethoxy-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.468   1.425   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.468  -0.115   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.802  -0.885   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.802  -2.425   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.136  -3.195   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.136  -4.735   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -3.890  -5.640   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -4.366  -7.105   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.906  -7.105   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -6.811  -8.351   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -6.184  -9.758   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.653  -9.919   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.026 -11.325   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -2.495 -11.486   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.868 -12.893   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.932 -12.571   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -4.305 -13.978   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -5.210 -15.224   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -6.742 -15.063   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -7.647 -16.309   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -9.179 -16.148   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -7.021 -17.716   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -7.926 -18.962   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -5.489 -17.877   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -4.863 -19.284   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -4.584 -16.631   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -3.052 -16.792   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -6.463 -12.410   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -7.368 -13.656   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -8.900 -13.495   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -7.090 -11.003   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -6.381  -5.640   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -7.846  -5.164   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -8.166  -3.658   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -6.469  -2.425   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -6.469  -0.885   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      -7.803  -0.115   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      -9.137  -0.885   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -5.136  -0.115   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -5.136   1.425   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -6.469   2.195   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -7.803   1.425   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -9.137   2.195   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -10.470   1.425   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -9.137   3.735   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0     -10.470   4.505   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      -7.803   4.505   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      -7.803   6.045   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      -6.469   3.735   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -5.136   4.505   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   39                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   35                                                  
CONECT    6    5    7   32                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   32                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   31                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17   28                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   18   27                                                  
CONECT   27   26                                                            
CONECT   28   16   29   31                                                  
CONECT   29   28   30                                                       
CONECT   30   29                                                            
CONECT   31   28   11                                                       
CONECT   32    9    6   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33                                                            
CONECT   35    5   36                                                       
CONECT   36   35   37   39                                                  
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39   36    3   40                                                  
CONECT   40   39   41                                                       
CONECT   41   40   42   49                                                  
CONECT   42   41   43                                                       
CONECT   43   42   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   46   47                                                  
CONECT   46   45                                                            
CONECT   47   45   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   41   50                                                  
CONECT   50   49                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  108    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₄H₄₈O₁₆

Average Mass

712.7420 Da

Monoisotopic Mass

712.29424 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

COC1=CC(C[C@H]2CO[C@@H]([C@H]2CO)C2=CC(OC)=C(O[C@@H]3O[C@@H](C)[C@H](O)[C@@H](O)[C@H]3O)C(OC)=C2)=CC(OC)=C1O[C@H]1O[C@H](C)[C@@H](O)[C@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C34H48O16/c1-14-24(36)26(38)28(40)33(47-14)49-31-20(42-3)8-16(9-21(31)43-4)7-18-13-46-30(19(18)12-35)17-10-22(44-5)32(23(11-17)45-6)50-34-29(41)27(39)25(37)15(2)48-34/h8-11,14-15,18-19,24-30,33-41H,7,12-13H2,1-6H3/t14-,15+,18+,19+,24-,25+,26+,27-,28+,29-,30-,33-,34+/m1/s1

InChI Key

JRXDFKKGTNYPDG-LYWRRTTASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Parsonsia alboflavescens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Lignan glycosides

Sub Class

Not Available

Direct Parent

Lignan glycosides

Alternative Parents

Substituents

Lignan glycoside
Tetrahydrofuran lignan
7,9p-epoxylignan
Furanoid lignan
Phenolic glycoside
Fatty acyl glycoside of mono- or disaccharide
Fatty acyl glycoside
Alkyl glycoside
O-glycosyl compound
Glycosyl compound
Dimethoxybenzene
M-dimethoxybenzene
Phenoxy compound
Phenol ether
Methoxybenzene
Anisole
Alkyl aryl ether
Monocyclic benzene moiety
Fatty acyl
Benzenoid
Monosaccharide
Oxane
Tetrahydrofuran
Secondary alcohol
Organoheterocyclic compound
Ether
Dialkyl ether
Acetal
Oxacycle
Polyol
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Organooxygen compound
Primary alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.45	ChemAxon
pKa (Strongest Acidic)	11.91	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	16	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	224.68 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	171.32 m³·mol⁻¹	ChemAxon
Polarizability	73.28 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162902817

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol (NP0240947)

MOL for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

3D MOL for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

3D SDF for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

3D-SDF for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

PDB for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

3D PDB for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

SMILES for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

INCHI for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

Structure for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)

3D Structure for NP0240947 ((2r,3s,4s,5s,6r)-2-(4-{[(3r,4r,5s)-5-(3,5-dimethoxy-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4-(hydroxymethyl)oxolan-3-yl]methyl}-2,6-dimethoxyphenoxy)-6-methyloxane-3,4,5-triol)