NP-MRD: Showing NP-Card for (2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate (NP0240321)

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Record Information

Version

2.0

Created at

2022-09-07 00:06:51 UTC

Updated at

2022-09-07 00:06:51 UTC

NP-MRD ID

NP0240321

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate

Description

(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl (2E)-3-phenylprop-2-enoate belongs to the class of organic compounds known as o-cinnamoyl glycosides. These are o-glycoside derivatives of cinnamic acid. Cinnamic acid is an aromatic compound containing a benzene and a carboxylic acid group forming 3-phenylprop-2-enoic acid. (2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate is found in Fragaria chiloensis. Based on a literature review very few articles have been published on (2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl (2E)-3-phenylprop-2-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 37  0  0  0  0  0  0  0  0999 V2000
   -0.1382    1.5972    2.8214 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1233    0.9430    1.7941 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4984    0.6617    1.4044 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7991   -0.0260    0.3254 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1538   -0.3366   -0.1116 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3467   -1.0678   -1.2645 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5879   -1.3906   -1.7254 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7061   -0.9881   -1.0399 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5566   -0.2572    0.1144 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2763    0.0653    0.5731 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9577    0.5014    1.0488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3026    0.7537    1.3939 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8746   -0.4746    1.6292 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8903   -1.3139    0.5310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5769   -0.6912   -0.6653 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9217   -0.4894   -0.3604 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9186    0.6385   -0.9569 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5534    0.4357   -1.1665 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0504    1.4730    0.3022 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3743    1.6080    0.6722 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2926    1.0349    2.0294 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9570   -0.3750   -0.2631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4592   -1.3854   -1.8056 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6855   -1.9658   -2.6346 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7060   -1.2404   -1.3990 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4428    0.0496    0.6382 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1967    0.6346    1.4737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3921    1.3454    2.3292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8256   -1.4583    0.2318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2888   -2.2997    0.7768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4451   -1.3200   -1.5573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3860    0.0508   -1.0407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3748    1.1608   -1.8074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3632    0.0722   -2.0655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6556    2.4647    0.0767 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4981    1.5897    1.6437 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
 11  2  1  0
  2  1  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 12 19  1  0
 19 20  1  0
 19 17  1  0
 17 18  1  0
 17 15  1  0
 10  5  1  0
 16 32  1  0
 15 31  1  6
 14 29  1  0
 14 30  1  0
 12 28  1  1
  3 21  1  0
  4 22  1  0
  6 23  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 10 27  1  0
 19 35  1  6
 20 36  1  0
 17 33  1  6
 18 34  1  0
M  END


  Mrv1652309072202062D          

 20 21  0  0  1  0            999 V2000
    2.1434   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  5 10  1  0  0  0  0
  2 11  1  0  0  0  0
 12 11  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0240321

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@@H]1CO[C@@H](OC(=O)\C=C\C2=CC=CC=C2)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C14H16O6/c15-10-8-19-14(13(18)12(10)17)20-11(16)7-6-9-4-2-1-3-5-9/h1-7,10,12-15,17-18H,8H2/b7-6+/t10-,12+,13-,14+/m1/s1

> <INCHI_KEY>
NIHVEXVFJPSMNX-MBMOEBRPSA-N

> <FORMULA>
C14H16O6

> <MOLECULAR_WEIGHT>
280.276

> <EXACT_MASS>
280.094688235

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
27.679947931148945

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl (2E)-3-phenylprop-2-enoate

> <JCHEM_LOGP>
0.7316864419999995

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.398335186310323

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.230252977912217

> <JCHEM_PKA_STRONGEST_BASIC>
-3.52660100247705

> <JCHEM_POLAR_SURFACE_AREA>
96.22000000000001

> <JCHEM_REFRACTIVITY>
69.5286

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl (2E)-3-phenylprop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  O   UNK     0       4.001  -2.310   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    5                                                       
CONECT   11    2   12                                                       
CONECT   12   11   13   19                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   12   20                                                  
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   42    0
END

View in JSmol

Synonyms

Value	Source
(2S,3R,4S,5R)-3,4,5-Trihydroxyoxan-2-yl (2E)-3-phenylprop-2-enoic acid	Generator

Chemical Formula

C₁₄H₁₆O₆

Average Mass

280.2760 Da

Monoisotopic Mass

280.09469 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

O[C@@H]1CO[C@@H](OC(=O)\C=C\C2=CC=CC=C2)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C14H16O6/c15-10-8-19-14(13(18)12(10)17)20-11(16)7-6-9-4-2-1-3-5-9/h1-7,10,12-15,17-18H,8H2/b7-6+/t10-,12+,13-,14+/m1/s1

InChI Key

NIHVEXVFJPSMNX-MBMOEBRPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Fragaria chiloensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-cinnamoyl glycosides. These are o-glycoside derivatives of cinnamic acid. Cinnamic acid is an aromatic compound containing a benzene and a carboxylic acid group forming 3-phenylprop-2-enoic acid.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Cinnamic acid esters

Direct Parent

O-cinnamoyl glycosides

Alternative Parents

Substituents

O-cinnamoyl glycoside
Styrene
Fatty acid ester
Monocyclic benzene moiety
Monosaccharide
Oxane
Fatty acyl
Benzenoid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Secondary alcohol
Polyol
Oxacycle
Monocarboxylic acid or derivatives
Acetal
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9718483

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11543704

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate (NP0240321)

MOL for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

3D MOL for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

3D SDF for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

3D-SDF for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

PDB for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

3D PDB for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

SMILES for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

INCHI for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

Structure for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)

3D Structure for NP0240321 ((2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl (2e)-3-phenylprop-2-enoate)