NP-MRD: Showing NP-Card for 4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one (NP0238668)

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Record Information

Version

2.0

Created at

2022-09-06 22:05:44 UTC

Updated at

2022-09-06 22:05:44 UTC

NP-MRD ID

NP0238668

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one

Description

4,9-Dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]Tridec-3-en-5-one belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton. 4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one is found in Chloranthus japonicus. 4,9-Dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]Tridec-3-en-5-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251507212D          

 29 33  0  0  0  0            999 V2000
    0.6772    0.6699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0438   -0.0692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8572   -0.2071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5039    0.3051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2709    0.0011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0100    0.3676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1479    1.1810    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5870   -0.2220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0288   -0.9188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2045   -0.9530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3911   -0.8151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5959   -1.6143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7443   -1.3273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9774   -1.0233    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0116   -1.8476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3149   -2.2894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5839   -1.9069    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1128   -2.3487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8438   -1.9662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8780   -1.1419    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0786   -3.1730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7753   -3.6148    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6524   -3.5555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6866   -4.3798    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3491   -3.1137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0801   -3.4962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383   -1.3899    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6613   -0.8002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1549   -0.9204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
  5 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  3 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  0  0  0  0
 14 27  1  0  0  0  0
 27 28  1  0  0  0  0
  2 28  1  0  0  0  0
 28 29  2  0  0  0  0
M  END

     RDKit          3D

 57 61  0  0  0  0  0  0  0  0999 V2000
    2.4025   -2.8819   -0.5817 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5109   -1.8207    0.1582 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3960   -1.7468    1.6245 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6044   -1.1554    2.3040 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4416   -0.3210    2.0243 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2751    0.4694    0.7471 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1941    1.6864    0.8728 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8441    0.8718    0.6532 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3333    1.0726   -0.7256 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5467    0.0389   -1.0775 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6715    0.0465   -0.2918 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8288   -1.1589    0.3953 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8053   -1.0584    1.3657 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9766   -2.4195    1.9975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3547   -3.3928    1.1066 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1235   -0.5773    0.8719 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9005   -0.2213    1.9853 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0254    0.5961   -0.0797 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2441    0.8379   -0.6678 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9549    0.2283   -1.1054 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3003   -1.0110   -1.6256 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2591    2.3451   -0.8648 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4513    3.0431   -1.8285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1905    4.2012   -2.2102 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5338    2.2163   -2.3137 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5197    2.6045   -3.3388 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4809    1.0763   -1.6770 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2852   -0.1660   -1.7015 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7761   -0.4460   -0.3175 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2076   -3.8413   -0.1373 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5064   -2.8159   -1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6948   -2.3841    2.1745 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5503   -1.0911    1.7264 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7529   -1.4811    3.3384 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8485    0.0710    2.8654 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6342    2.5389    1.3036 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0272    1.4647    1.5752 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6217    1.9859   -0.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7238    1.8025    1.2827 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2180    0.1074    1.1872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5790    0.9010    0.4387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4485   -0.3704    2.1568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7844   -2.3470    2.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0635   -2.7482    2.5319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5205   -3.0680    0.1878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6650   -1.3813    0.3371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4318   -0.4008    2.8292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6755    1.4884    0.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2480    1.8045   -0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8372    1.0101   -1.8749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7054   -0.9211   -2.5199 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7562    1.7693   -4.0354 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4734    2.9579   -2.9193 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1153    3.4569   -3.9567 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6078   -1.0202   -1.9961 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0818   -0.1232   -2.4631 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8906   -0.3221   -0.3507 H   0  0  0  0  0  0  0  0  0  0  0  0
 26 25  1  0
 25 27  2  0
 27 28  1  0
 28 29  1  0
 29  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  1
  6  8  1  0
  8  9  1  0
  9 10  1  6
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
  9 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
  9 27  1  0
 20 11  1  0
  6 29  1  0
  5  3  1  0
 26 52  1  0
 26 53  1  0
 26 54  1  0
 28 55  1  0
 28 56  1  0
 29 57  1  6
  1 30  1  0
  1 31  1  0
  3 32  1  1
  4 33  1  0
  4 34  1  0
  5 35  1  1
  7 36  1  0
  7 37  1  0
  7 38  1  0
  8 39  1  0
  8 40  1  0
 11 41  1  1
 13 42  1  1
 14 43  1  0
 14 44  1  0
 15 45  1  0
 16 46  1  6
 17 47  1  0
 18 48  1  1
 19 49  1  0
 20 50  1  6
 21 51  1  0
M  END


  Mrv1533004251507212D          

 29 33  0  0  0  0            999 V2000
    0.6772    0.6699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0438   -0.0692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8572   -0.2071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5039    0.3051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2709    0.0011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0100    0.3676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1479    1.1810    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5870   -0.2220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0288   -0.9188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2045   -0.9530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3911   -0.8151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5959   -1.6143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7443   -1.3273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9774   -1.0233    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0116   -1.8476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3149   -2.2894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5839   -1.9069    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1128   -2.3487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8438   -1.9662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8780   -1.1419    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0786   -3.1730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7753   -3.6148    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6524   -3.5555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6866   -4.3798    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3491   -3.1137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0801   -3.4962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383   -1.3899    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6613   -0.8002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1549   -0.9204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
  5 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  3 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  0  0  0  0
 14 27  1  0  0  0  0
 27 28  1  0  0  0  0
  2 28  1  0  0  0  0
 28 29  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0238668

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C2CC3C(=C)C4CC4C3(C)CC2(OC2OC(CO)C(O)C(O)C2O)OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C21H28O8/c1-8-10-4-13(10)20(3)7-21(12(5-11(8)20)9(2)18(26)28-21)29-19-17(25)16(24)15(23)14(6-22)27-19/h10-11,13-17,19,22-25H,1,4-7H2,2-3H3

> <INCHI_KEY>
DIHJSNVGGKCCRW-UHFFFAOYSA-N

> <FORMULA>
C21H28O8

> <MOLECULAR_WEIGHT>
408.447

> <EXACT_MASS>
408.178417862

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
41.16589028225639

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one

> <ALOGPS_LOGP>
-0.39

> <JCHEM_LOGP>
0.36629136366666665

> <ALOGPS_LOGS>
-2.03

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.19840469057404

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.206197085817022

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981085040496466

> <JCHEM_POLAR_SURFACE_AREA>
125.68

> <JCHEM_REFRACTIVITY>
99.01030000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.82e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       1.264   1.250   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.948  -0.129   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.467  -0.387   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.674   0.569   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.106   0.002   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.485   0.686   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.743   2.205   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.562  -0.414   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.387  -1.715   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.848  -1.779   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.330  -1.522   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.712  -3.013   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.123  -2.478   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.691  -1.910   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       3.755  -3.449   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.454  -4.274   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.090  -3.560   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -0.211  -4.384   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.575  -3.670   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -1.639  -2.132   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.147  -5.923   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.447  -6.748   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.218  -6.637   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       1.282  -8.176   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       2.518  -5.812   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       3.883  -6.526   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       2.311  -2.594   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.234  -1.494   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -0.289  -1.718   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   28                                                  
CONECT    3    2    4   14                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8   10                                                       
CONECT   10    9    8   11                                                  
CONECT   11   10    5   12   13                                             
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13    3   15   27                                             
CONECT   15   14   16                                                       
CONECT   16   15   17   25                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   16   26                                                  
CONECT   26   25                                                            
CONECT   27   14   28                                                       
CONECT   28   27    2   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₈O₈

Average Mass

408.4470 Da

Monoisotopic Mass

408.17842 Da

IUPAC Name

4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one

Traditional Name

4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one

CAS Registry Number

Not Available

SMILES

CC1=C2CC3C(=C)C4CC4C3(C)CC2(OC2OC(CO)C(O)C(O)C2O)OC1=O

InChI Identifier

InChI=1S/C21H28O8/c1-8-10-4-13(10)20(3)7-21(12(5-11(8)20)9(2)18(26)28-21)29-19-17(25)16(24)15(23)14(6-22)27-19/h10-11,13-17,19,22-25H,1,4-7H2,2-3H3

InChI Key

DIHJSNVGGKCCRW-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chloranthus japonicus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Eudesmanolides, secoeudesmanolides, and derivatives

Alternative Parents

Substituents

Eudesmanolide
Terpene glycoside
Sesquiterpenoid
Naphthofuran
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Ketal
2-furanone
Oxane
Monosaccharide
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Dihydrofuran
Secondary alcohol
Carboxylic acid ester
Lactone
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Polyol
Acetal
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Primary alcohol
Organic oxygen compound
Carbonyl group
Organooxygen compound
Alcohol
Organic oxide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.39	ALOGPS
logP	0.37	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	99.01 m³·mol⁻¹	ChemAxon
Polarizability	41.17 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

76008034

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one (NP0238668)

MOL for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

3D MOL for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

3D SDF for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

3D-SDF for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

PDB for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

3D PDB for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

SMILES for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

INCHI for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

Structure for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)

3D Structure for NP0238668 (4,9-dimethyl-13-methylidene-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-oxatetracyclo[7.4.0.0³,⁷.0¹⁰,¹²]tridec-3-en-5-one)