NP-MRD: Showing NP-Card for 2-(dec-9-en-1-yl)phenanthrene (NP0238425)

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Record Information

Version

2.0

Created at

2022-09-06 21:49:23 UTC

Updated at

2022-09-06 21:49:23 UTC

NP-MRD ID

NP0238425

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(dec-9-en-1-yl)phenanthrene

Description

2-(Dec-9-en-1-yl)phenanthrene belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene. 2-(dec-9-en-1-yl)phenanthrene is found in Kalanchoe pinnata. 2-(Dec-9-en-1-yl)phenanthrene is possibly neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 52 54  0  0  0  0  0  0  0  0999 V2000
    8.0960   -1.8299    1.0835 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0317   -1.0451    1.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1142    0.3814    0.6611 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2641    0.6595   -0.5525 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7951    0.3280   -0.2779 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9471    0.6012   -1.4751 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5109    0.2723   -1.2312 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9726    1.0867   -0.1083 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5022    0.7892    0.1686 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3796    1.0697   -1.0112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7923    0.7388   -0.6053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6070    1.6886   -0.0389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9059    1.3876    0.3352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4062    0.1255    0.1453 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5602   -0.8345   -0.4352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0628   -2.1000   -0.6252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3509   -2.4042   -0.2559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2055   -1.4848    0.3159 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4949   -1.8209    0.6763 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3157   -0.8744    1.2439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8131    0.3884    1.4332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5245    0.7406    1.0777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6893   -0.1922    0.5089 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2616   -0.5423   -0.8117 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0666   -1.3981    0.8157 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0248   -2.8583    1.3641 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0663   -1.4507    1.3081 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1621    0.6044    0.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7881    0.9742    1.5356 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6346    0.0688   -1.4135 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3064    1.7372   -0.8042 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4615    0.9836    0.5673 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6541   -0.7100    0.0390 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0550    1.6913   -1.7110 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3698    0.0478   -2.3445 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8875    0.4417   -2.1367 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4470   -0.8296   -1.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0378    2.1494   -0.3810 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4889    0.8475    0.8544 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2055    1.5214    0.9694 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3812   -0.2399    0.5354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3734    2.1466   -1.2435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1290    0.5273   -1.9230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2186    2.6800    0.1119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4697    2.1556    0.7594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4440   -2.8904   -1.0755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7525   -3.4166   -0.4081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8449   -2.8293    0.5070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3521   -1.1259    1.5391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4454    1.1423    1.8776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2217    1.7298    1.2582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500   -1.3237   -1.2569 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 15 24  2  0
 24 11  1  0
 23 14  1  0
 23 18  1  0
  1 25  1  0
  1 26  1  0
  2 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  8 38  1  0
  8 39  1  0
  9 40  1  0
  9 41  1  0
 10 42  1  0
 10 43  1  0
 12 44  1  0
 13 45  1  0
 16 46  1  0
 17 47  1  0
 19 48  1  0
 20 49  1  0
 21 50  1  0
 22 51  1  0
 24 52  1  0
M  END


  Mrv1533004231521012D          

 24 26  0  0  0  0            999 V2000
    6.4302   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 14 23  1  0  0  0  0
 18 23  1  0  0  0  0
 15 24  2  0  0  0  0
 11 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0238425

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C=CCCCCCCCCC1=CC=C2C(C=CC3=CC=CC=C23)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C24H28/c1-2-3-4-5-6-7-8-9-12-20-15-18-24-22(19-20)17-16-21-13-10-11-14-23(21)24/h2,10-11,13-19H,1,3-9,12H2

> <INCHI_KEY>
QCSSPUSNCHKEOS-UHFFFAOYSA-N

> <FORMULA>
C24H28

> <MOLECULAR_WEIGHT>
316.488

> <EXACT_MASS>
316.219100902

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
40.953574322899485

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(dec-9-en-1-yl)phenanthrene

> <ALOGPS_LOGP>
9.92

> <JCHEM_LOGP>
8.162750717333333

> <ALOGPS_LOGS>
-8.22

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
105.45270000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.93e-06 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(dec-9-en-1-yl)phenanthrene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0      12.003 -11.550   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      13.337 -12.320   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      14.670 -11.550   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      16.004 -12.320   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      17.338 -11.550   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      18.672 -12.320   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      20.005 -11.550   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      21.339 -12.320   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      22.673 -11.550   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      24.006 -12.320   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      25.340 -11.550   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      26.674 -12.320   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      28.007 -11.550   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      28.007 -10.010   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      26.674  -9.240   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      26.674  -7.700   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      28.007  -6.930   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      29.341  -7.700   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      30.675  -6.930   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      32.008  -7.700   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      32.008  -9.240   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      30.675 -10.010   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      29.341  -9.240   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      25.340 -10.010   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   24                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   23                                                  
CONECT   15   14   16   24                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   14   18                                                  
CONECT   24   15   11                                                       
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₂₈

Average Mass

316.4880 Da

Monoisotopic Mass

316.21910 Da

IUPAC Name

2-(dec-9-en-1-yl)phenanthrene

Traditional Name

2-(dec-9-en-1-yl)phenanthrene

CAS Registry Number

Not Available

SMILES

C=CCCCCCCCCC1=CC=C2C(C=CC3=CC=CC=C23)=C1

InChI Identifier

InChI=1S/C24H28/c1-2-3-4-5-6-7-8-9-12-20-15-18-24-22(19-20)17-16-21-13-10-11-14-23(21)24/h2,10-11,13-19H,1,3-9,12H2

InChI Key

QCSSPUSNCHKEOS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kalanchoe pinnata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Not Available

Direct Parent

Phenanthrenes and derivatives

Alternative Parents

Substituents

Phenanthrene
Naphthalene
Aromatic hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	9.92	ALOGPS
logP	8.16	ChemAxon
logS	-8.2	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	105.45 m³·mol⁻¹	ChemAxon
Polarizability	40.95 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-(dec-9-en-1-yl)phenanthrene (NP0238425)

MOL for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

3D MOL for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

3D SDF for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

3D-SDF for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

PDB for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

3D PDB for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

SMILES for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

INCHI for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

Structure for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)

3D Structure for NP0238425 (2-(dec-9-en-1-yl)phenanthrene)