NP-MRD: Showing NP-Card for 13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene (NP0238006)

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Record Information

Version

2.0

Created at

2022-09-06 21:18:59 UTC

Updated at

2022-09-06 21:18:59 UTC

NP-MRD ID

NP0238006

Secondary Accession Numbers

None

Natural Product Identification

Common Name

13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene

Description

Arnoamine B, also known as arnoamine-b, belongs to the class of organic compounds known as pyrido[2,3,4-kl]acridines. These are organic heterocyclic compounds with a structure based on the pyrido[2,3,4-kl]acridine skeleton. Arnoamine B is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 37  0  0  0  0  0  0  0  0999 V2000
   -5.1736   -0.1963   -0.0598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0130    0.6038   -0.1059 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7394    0.1098   -0.0496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5057   -1.2319    0.0580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2084   -1.7273    0.1147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5997   -2.9580    0.2189 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7744   -2.7310    0.2204 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0176   -1.4100    0.1210 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1132   -0.6042    0.0736 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3582   -1.1804    0.1358 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5092   -0.4060    0.0916 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3831    0.9617   -0.0166 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1468    1.5691   -0.0811 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0033    0.7822   -0.0358 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7463    1.3449   -0.0971 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5614    2.6940   -0.2047 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7543    3.1558   -0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8064    2.3253   -0.2090 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6744    0.9983   -0.1039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3787    0.5144   -0.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1809   -0.8246    0.0588 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0548    0.4471   -0.3230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1201   -1.0754   -0.7388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3513   -0.5001    1.0057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3207   -1.9191    0.1001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0947   -3.8976    0.2851 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5558   -3.4884    0.2903 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3996   -2.2617    0.2205 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4847   -0.8647    0.1409 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3030    1.5419   -0.0489 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1139    2.6324   -0.1643 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3974    3.3516   -0.2442 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8917    4.2444   -0.3456 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 19  2  0
 19 18  1  0
 18 17  2  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  2  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 10  9  2  0
  9  8  1  0
  8  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  2  0
  5 21  1  0
 21 20  2  0
  4  3  1  0
 20 19  1  0
 20 15  1  0
  9 14  1  0
 21  8  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
 17 33  1  0
 16 32  1  0
 13 31  1  0
 12 30  1  0
 11 29  1  0
 10 28  1  0
  7 27  1  0
  6 26  1  0
  4 25  1  0
M  END


  Mrv1533004231523112D          

 21 25  0  0  0  0            999 V2000
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5803    2.1307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4008    2.0445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
  3 19  2  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
 20 21  2  0  0  0  0
  5 21  1  0  0  0  0
  8 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0238006

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2N=CC=C3C4=CC=CC=C4N4C=CC(=C1)C4=C23

> <INCHI_IDENTIFIER>
InChI=1S/C18H12N2O/c1-21-15-10-11-7-9-20-14-5-3-2-4-12(14)13-6-8-19-17(15)16(13)18(11)20/h2-10H,1H3

> <INCHI_KEY>
YXPUKIVVULSJNK-UHFFFAOYSA-N

> <FORMULA>
C18H12N2O

> <MOLECULAR_WEIGHT>
272.307

> <EXACT_MASS>
272.094963014

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
29.529697833967738

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(17),2,4,6,9,11,13,15,18-nonaene

> <ALOGPS_LOGP>
4.41

> <JCHEM_LOGP>
2.9603492176666664

> <ALOGPS_LOGS>
-5.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.12923620384158252

> <JCHEM_POLAR_SURFACE_AREA>
26.53

> <JCHEM_REFRACTIVITY>
82.61710000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.03e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(17),2,4,6,9,11,13,15,18-nonaene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.817   3.977   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.348   3.816   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       6.668   2.310   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0       4.001  -2.310   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   19                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   21                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   21                                                  
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    9   15                                                  
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18    3   20                                                  
CONECT   20   19   15   21                                                  
CONECT   21   20    5    8                                                  
MASTER        0    0    0    0    0    0    0    0   21    0   50    0
END

View in JSmol

Synonyms

Value	Source
Arnoamine-b	MeSH

Chemical Formula

C₁₈H₁₂N₂O

Average Mass

272.3070 Da

Monoisotopic Mass

272.09496 Da

IUPAC Name

13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(17),2,4,6,9,11,13,15,18-nonaene

Traditional Name

13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(17),2,4,6,9,11,13,15,18-nonaene

CAS Registry Number

Not Available

SMILES

COC1=C2N=CC=C3C4=CC=CC=C4N4C=CC(=C1)C4=C23

InChI Identifier

InChI=1S/C18H12N2O/c1-21-15-10-11-7-9-20-14-5-3-2-4-12(14)13-6-8-19-17(15)16(13)18(11)20/h2-10H,1H3

InChI Key

YXPUKIVVULSJNK-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrido[2,3,4-kl]acridines. These are organic heterocyclic compounds with a structure based on the pyrido[2,3,4-kl]acridine skeleton.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Quinolines and derivatives

Sub Class

Benzoquinolines

Direct Parent

Pyrido[2,3,4-kl]acridines

Alternative Parents

Substituents

Pyrido[2,3,4-kl]acridine
Pyrroloquinoline
Naphthyridine
Indole
Indole or derivatives
Indolizine
Pyrrolopyridine
Anisole
Phenol ether
Alkyl aryl ether
Benzenoid
Pyridine
Heteroaromatic compound
Pyrrole
Azacycle
Ether
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.41	ALOGPS
logP	2.96	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Basic)	-0.13	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.53 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	82.62 m³·mol⁻¹	ChemAxon
Polarizability	29.53 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10445929

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene (NP0238006)

MOL for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

3D MOL for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

3D SDF for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

3D-SDF for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

PDB for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

3D PDB for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

SMILES for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

INCHI for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

Structure for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)

3D Structure for NP0238006 (13-methoxy-8,15-diazapentacyclo[9.6.2.0²,⁷.0⁸,¹⁹.0¹⁴,¹⁸]nonadeca-1(18),2(7),3,5,9,11(19),12,14,16-nonaene)