Np mrd loader

Showing NP-Card for 4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane (NP0237798)

Jump To Section:
IdentificationSpectraBioTaxonomyChemoTaxonomyPhysical propertiesLinksReferencesXML
Record Information
Version2.0
Created at2022-09-06 21:02:43 UTC
Updated at2022-09-06 21:02:44 UTC
NP-MRD IDNP0237798
Secondary Accession NumbersNone
Natural Product Identification
Common Name4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane
Description4-Methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane belongs to the class of organic compounds known as oxolanes. These are organic compounds containing an oxolane (tetrahydrofuran) ring, which is a saturated aliphatic five-member ring containing one oxygen and five carbon atoms. 4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane is found in Cydonia oblonga. 4-Methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
MOL3D MOLSDFPDBSMILESInChI

MOL for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)


  Mrv1533004251507242D          

 11 11  0  0  0  0            999 V2000
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1501   -0.7365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6351   -1.4039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2995   -2.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4555   -1.3177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  7  5  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
M  END
Download

3D MOL for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)

     RDKit          3D

 27 27  0  0  0  0  0  0  0  0999 V2000
    3.7191    0.1269   -1.6244 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9318    0.1923   -0.5679 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4209    0.8194    0.6767 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5814   -0.3436   -0.6002 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7937   -0.2766    0.4614 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5585   -0.8280    0.3868 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2893   -0.1849   -0.7643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7312   -0.2591   -0.2997 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2275    1.1109    0.0186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6023   -1.0286    0.9962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3536   -0.5513    1.4620 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7286    0.5153   -1.6350 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3351   -0.3353   -2.5155 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0049    1.8186    0.8462 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1837    0.2116    1.5881 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5402    0.9485    0.6639 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2257   -0.8096   -1.5334 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1581    0.1774    1.3507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4798   -1.9275    0.2786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0967   -0.7800   -1.6594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9698    0.8496   -0.9428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3500   -0.7914   -1.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3718    1.7622    0.2485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8578    1.0511    0.9516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8956    1.4882   -0.7655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4087   -0.8430    1.7022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4306   -2.1130    0.7911 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8 10  1  0
 10 11  1  0
 11  6  1  0
  6  7  1  0
  6  5  1  0
  5  4  2  0
  4  2  1  0
  2  3  1  0
  2  1  2  0
  7  8  1  0
  9 23  1  0
  9 24  1  0
  9 25  1  0
  8 22  1  6
 10 26  1  0
 10 27  1  0
  6 19  1  6
  7 20  1  0
  7 21  1  0
  5 18  1  0
  4 17  1  0
  3 14  1  0
  3 15  1  0
  3 16  1  0
  1 12  1  0
  1 13  1  0
M  END
Download

3D SDF for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)


  Mrv1533004251507242D          

 11 11  0  0  0  0            999 V2000
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1501   -0.7365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6351   -1.4039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2995   -2.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4555   -1.3177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  7  5  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0237798

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1COC(C1)C=CC(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C10H16O/c1-8(2)4-5-10-6-9(3)7-11-10/h4-5,9-10H,1,6-7H2,2-3H3

> <INCHI_KEY>
SULWOTZUSYCRIP-UHFFFAOYSA-N

> <FORMULA>
C10H16O

> <MOLECULAR_WEIGHT>
152.237

> <EXACT_MASS>
152.120115135

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
18.536402626035546

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane

> <ALOGPS_LOGP>
3.11

> <JCHEM_LOGP>
2.4569135663333332

> <ALOGPS_LOGS>
-2.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.173919183104445

> <JCHEM_POLAR_SURFACE_AREA>
9.23

> <JCHEM_REFRACTIVITY>
48.458600000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.33e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)

Download
PDB for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)
HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       1.060   3.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.830  -0.290   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.147  -1.375   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.052  -2.621   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.426  -4.027   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.584  -2.460   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5    2                                                       
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   22    0
END

Download
3D PDB for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)
Download
SMILES for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)
CC1COC(C1)C=CC(C)=C
Download
INCHI for NP0237798 (4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane)
InChI=1S/C10H16O/c1-8(2)4-5-10-6-9(3)7-11-10/h4-5,9-10H,1,6-7H2,2-3H3
Download
View in JSmol
SynonymsNot Available
Chemical FormulaC10H16O
Average Mass152.2370 Da
Monoisotopic Mass152.12012 Da
IUPAC Name4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane
Traditional Name4-methyl-2-(3-methylbuta-1,3-dien-1-yl)oxolane
CAS Registry NumberNot Available
SMILES
CC1COC(C1)C=CC(C)=C
InChI Identifier
InChI=1S/C10H16O/c1-8(2)4-5-10-6-9(3)7-11-10/h4-5,9-10H,1,6-7H2,2-3H3
InChI KeySULWOTZUSYCRIP-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cydonia oblongaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oxolanes. These are organic compounds containing an oxolane (tetrahydrofuran) ring, which is a saturated aliphatic five-member ring containing one oxygen and five carbon atoms.
KingdomOrganic compounds  
Super ClassOrganoheterocyclic compounds  
ClassOxolanes  
Sub ClassNot Available
Direct ParentOxolanes  
Alternative Parents
Substituents
  • Oxolane
    • 

  • Oxacycle
    • 

  • Ether
    • 

  • Dialkyl ether
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.11ALOGPS
logP2.46ChemAxon
logS-2.8ALOGPS
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area9.23 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity48.46 m³·mol⁻¹ChemAxon
Polarizability18.54 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound86247097  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]