NP-MRD: Showing NP-Card for (2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid (NP0237779)

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Record Information

Version

2.0

Created at

2022-09-06 21:01:22 UTC

Updated at

2022-09-06 21:01:22 UTC

NP-MRD ID

NP0237779

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid

Description

Connatin belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. (2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid is found in Leucocybe connata and Lyophyllum connatum. (2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid was first documented in 2005 (PMID: 15725662). Based on a literature review very few articles have been published on Connatin (PMID: 30536052).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 31  0  0  0  0  0  0  0  0999 V2000
    3.7777    2.2952   -0.8123 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2574    0.9953   -0.3737 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0793    0.1456    0.4466 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9646    0.6329   -0.7785 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2981    1.4159   -1.4930 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4237   -0.6055   -0.3811 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1353   -1.4517    0.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0885   -1.0222   -0.7754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9549   -0.5675    0.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2766   -1.0452   -0.2486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4530   -0.7172    0.6033 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6288   -1.2791   -0.0751 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6631    0.7442    0.6669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6902    1.3140    0.1680 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7654    1.6234    1.2730 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4149    2.7419   -0.0222 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9611    3.0117   -1.0241 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3466    2.1494   -1.7618 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6533   -0.0683    1.4477 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3051   -0.8009   -0.0733 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0861    0.6381    0.5896 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5659   -1.8292    1.0827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1635   -0.6146   -1.7699 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0909   -2.1191   -0.8454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7022   -1.0113    1.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9327    0.5336    0.3610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4021   -0.6894   -1.3032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2174   -2.1621   -0.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3479   -1.1528    1.6020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3726   -2.1055   -0.6573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3883   -1.5060    0.5883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4898    2.5062    0.8709 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 15  1  0
 13 14  2  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
  9 25  1  0
  9 26  1  0
 10 27  1  0
 10 28  1  0
 11 29  1  1
 12 30  1  0
 12 31  1  0
 15 32  1  0
M  END


  Mrv1652309062223012D          

 15 14  0  0  1  0            999 V2000
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2849    3.3809    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0237779

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN(C)C(=O)N(O)CCC[C@H](N)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H17N3O4/c1-10(2)8(14)11(15)5-3-4-6(9)7(12)13/h6,15H,3-5,9H2,1-2H3,(H,12,13)/t6-/m0/s1

> <INCHI_KEY>
BDOXLUSRCYFNBH-LURJTMIESA-N

> <FORMULA>
C8H17N3O4

> <MOLECULAR_WEIGHT>
219.241

> <EXACT_MASS>
219.121906039

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
22.263211793929287

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid

> <JCHEM_LOGP>
-3.4879451014523433

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.740222915166585

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.2426771912676076

> <JCHEM_PKA_STRONGEST_BASIC>
9.06446249983666

> <JCHEM_POLAR_SURFACE_AREA>
107.10000000000001

> <JCHEM_REFRACTIVITY>
52.88700000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       4.263   4.001   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       5.596   4.771   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0       5.596   6.311   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       6.930   2.461   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0       8.264   4.771   0.000  0.00  0.00           N+0
HETATM    7  O   UNK     0       8.264   6.311   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      13.598   6.311   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      16.266   4.771   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      14.932   2.461   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   28    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₈H₁₇N₃O₄

Average Mass

219.2410 Da

Monoisotopic Mass

219.12191 Da

IUPAC Name

(2S)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid

Traditional Name

(2S)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid

CAS Registry Number

Not Available

SMILES

CN(C)C(=O)N(O)CCC[C@H](N)C(O)=O

InChI Identifier

InChI=1S/C8H17N3O4/c1-10(2)8(14)11(15)5-3-4-6(9)7(12)13/h6,15H,3-5,9H2,1-2H3,(H,12,13)/t6-/m0/s1

InChI Key

BDOXLUSRCYFNBH-LURJTMIESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Leucocybe connata	LOTUS Database	35616633
Lyophyllum connatum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Fatty acid
Amino acid
Carboxylic acid
Monocarboxylic acid or derivatives
Amine
Hydrocarbon derivative
Organic oxide
Primary amine
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Primary aliphatic amine
Organic nitrogen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.5	ChemAxon
pKa (Strongest Acidic)	2.24	ChemAxon
pKa (Strongest Basic)	9.06	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	107.1 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	52.89 m³·mol⁻¹	ChemAxon
Polarizability	22.26 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

75140696

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101107434

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Bollenbach A, Tsikas D: Pharmacological activation of dimethylarginine dimethylaminohydrolase (DDAH) activity by inorganic nitrate and DDAH inhibition by N(G)-hydroxy-L-arginine, N(omega),N(omega)-dimethyl-L-citrulline and N(omega),N(omega)-dimethyl-N(delta)-hydroxy-L-citrulline: results and overview. Amino Acids. 2019 Mar;51(3):483-494. doi: 10.1007/s00726-018-2684-6. Epub 2018 Dec 8. [PubMed:30536052 ]
Kimura C, Nukina M, Igarashi K, Sugawara Y: beta-Hydroxyergothioneine, a new ergothioneine derivative from the mushroom Lyophyllum connatum, and its protective activity against carbon tetrachloride-induced injury in primary culture hepatocytes. Biosci Biotechnol Biochem. 2005 Feb;69(2):357-63. doi: 10.1271/bbb.69.357. [PubMed:15725662 ]
LOTUS database [Link]

Showing NP-Card for (2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid (NP0237779)

MOL for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

3D MOL for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

3D SDF for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

3D-SDF for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

PDB for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

3D PDB for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

SMILES for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

INCHI for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

Structure for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)

3D Structure for NP0237779 ((2s)-2-amino-5-[(dimethylcarbamoyl)(hydroxy)amino]pentanoic acid)