NP-MRD: Showing NP-Card for methyl glucoside (NP0237630)

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Record Information

Version

2.0

Created at

2022-09-06 20:49:57 UTC

Updated at

2022-09-06 20:49:57 UTC

NP-MRD ID

NP0237630

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl glucoside

Description

methyl glucoside is found in Forsythia viridissima, Pseudoceratina purpurea and Quassia amara. methyl glucoside was first documented in 1975 (PMID: 1095369).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304032018332D          

 18 18  0  0  1  0            999 V2000
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  1  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  2  1  0  0  0  0
  4  9  1  6  0  0  0
  5 10  1  6  0  0  0
  6 11  1  6  0  0  0
 12  1  1  0  0  0  0
  7 12  1  6  0  0  0
 13  3  1  0  0  0  0
 13  7  1  0  0  0  0
  3 14  1  6  0  0  0
  4 15  1  1  0  0  0
  5 16  1  6  0  0  0
  6 17  1  1  0  0  0
  7 18  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0237630

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]1(O)[C@]([H])(O)[C@@]([H])(CO)O[C@]([H])(OC)[C@]1([H])O

> <INCHI_IDENTIFIER>
InChI=1S/C7H14O6/c1-12-7-6(11)5(10)4(9)3(2-8)13-7/h3-11H,2H2,1H3/t3-,4-,5+,6-,7+/m1/s1

> <INCHI_KEY>
HOVAGTYPODGVJG-ZFYZTMLRSA-N

> <FORMULA>
C7H14O6

> <MOLECULAR_WEIGHT>
194.1825

> <EXACT_MASS>
194.07903818

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
18.143823694277305

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-methoxyoxane-3,4,5-triol

> <ALOGPS_LOGP>
-2.49

> <JCHEM_LOGP>
-2.2894127143333334

> <ALOGPS_LOGS>
0.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.200415670112982

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.21139322915757

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083281156967

> <JCHEM_POLAR_SURFACE_AREA>
99.38000000000001

> <JCHEM_REFRACTIVITY>
40.6746

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.62e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl α-D-glucopyranoside

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-APR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-APR-20         0                                  
HETATM    1  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       4.001   3.850   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+0
HETATM   14  H   UNK     0       2.667   3.080   0.000  0.00  0.00           H+0
HETATM   15  H   UNK     0       0.000   3.080   0.000  0.00  0.00           H+0
HETATM   16  H   UNK     0       1.334   0.770   0.000  0.00  0.00           H+0
HETATM   17  H   UNK     0      -1.334   0.770   0.000  0.00  0.00           H+0
HETATM   18  H   UNK     0       0.000  -1.540   0.000  0.00  0.00           H+0
CONECT    1   12                                                            
CONECT    2    3    8                                                       
CONECT    3    2    4   13   14                                             
CONECT    4    3    5    9   15                                             
CONECT    5    4    6   10   16                                             
CONECT    6    5    7   11   17                                             
CONECT    7    6   12   13   18                                             
CONECT    8    2                                                            
CONECT    9    4                                                            
CONECT   10    5                                                            
CONECT   11    6                                                            
CONECT   12    1    7                                                       
CONECT   13    3    7                                                       
CONECT   14    3                                                            
CONECT   15    4                                                            
CONECT   16    5                                                            
CONECT   17    6                                                            
CONECT   18    7                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

View in JSmol

Synonyms

Value	Source
1-O-Methyl-alpha-D-glucopyranose	ChEBI
1-O-Methyl-alpha-D-glucopyranoside	ChEBI
1-O-Methyl-alpha-D-glucoside	ChEBI
alpha-D-Methyl glucoside	ChEBI
alpha-Methyl D-glucose ether	ChEBI
alpha-Methyl-D-glucoside	ChEBI
alpha-Methylglucoside	ChEBI
Me alpha-GLC	ChEBI
Methyl alpha-D-glucoside	ChEBI
Methyl hexopyranoside	ChEBI
1-O-Methyl-a-D-glucopyranose	Generator
1-O-Methyl-α-D-glucopyranose	Generator
1-O-Methyl-a-D-glucopyranoside	Generator
1-O-Methyl-α-D-glucopyranoside	Generator
1-O-Methyl-a-D-glucoside	Generator
1-O-Methyl-α-D-glucoside	Generator
a-D-Methyl glucoside	Generator
Α-D-methyl glucoside	Generator
a-Methyl D-glucose ether	Generator
Α-methyl D-glucose ether	Generator
a-Methyl-D-glucoside	Generator
Α-methyl-D-glucoside	Generator
a-Methylglucoside	Generator
Α-methylglucoside	Generator
Me a-GLC	Generator
Me α-GLC	Generator
Methyl a-D-glucoside	Generator
Methyl α-D-glucoside	Generator
Methyl a-D-glucopyranoside	Generator
Methyl α-D-glucopyranoside	Generator
Methyl-D-glucoside	MeSH
Methylglucoside, 13C-labeled	MeSH
alpha-Methyl-D-glucopyranoside	MeSH
Methyl-alpha-glucopyranoside	MeSH
Methyl D-glucoside	MeSH
Methyl D-glucopyranoside	MeSH
Methyl glucose	MeSH
Methylglucoside, 6-(13)C-labeled	MeSH
Methyl-alpha-D-glucoside	MeSH
1-O-Methylglucose	MeSH
D-Glucoside, methyl	MeSH
beta-Methylglucoside	MeSH
Methylglucoside, 2H-labeled, (beta-D)-isomer	MeSH
Methyl beta-D-glucopyranoside	MeSH
Methylglucoside, (alpha-D)-isomer	MeSH
Methylglucoside, 13C-labeled, (beta-D)-isomer	MeSH
Methylglucoside, 6-(17)O-labeled, (alpha-L)-isomer	MeSH
AlphaMG	MeSH
alpha-Methylglucose	MeSH
Methylglucoside, (beta-D)-isomer	MeSH
beta-Methyl-D-glucoside	MeSH
Methylglucoside, 5-(17)O-labeled	MeSH
Methylglucoside	MeSH

Chemical Formula

C₇H₁₄O₆

Average Mass

194.1825 Da

Monoisotopic Mass

194.07904 Da

IUPAC Name

(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-methoxyoxane-3,4,5-triol

Traditional Name

methyl α-D-glucopyranoside

CAS Registry Number

Not Available

SMILES

[H][C@]1(O)[C@]([H])(O)[C@@]([H])(CO)O[C@]([H])(OC)[C@]1([H])O

InChI Identifier

InChI=1S/C7H14O6/c1-12-7-6(11)5(10)4(9)3(2-8)13-7/h3-11H,2H2,1H3/t3-,4-,5+,6-,7+/m1/s1

InChI Key

HOVAGTYPODGVJG-ZFYZTMLRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Forsythia viridissima	LOTUS Database	35616633
Pseudoceratina purpurea	LOTUS Database	35616633
Quassia amara	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

O-glycosyl compound
Oxane
Monosaccharide
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Acetal
Hydrocarbon derivative
Primary alcohol
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

alpha-D-glucoside (CHEBI:320061 )
methyl D-glucoside (CHEBI:320061 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.5	ALOGPS
logP	-2.3	ChemAxon
logS	0.65	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	99.38 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	40.67 m³·mol⁻¹	ChemAxon
Polarizability	18.14 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Methylglucoside

METLIN ID

Not Available

PubChem Compound

64947

PDB ID

Not Available

ChEBI ID

320061

Good Scents ID

Not Available

References

General References

Strugala GJ, Elsenhans B, Forth W: Active transport inhibition in rat small intestine by amphiphilic amines: an in vitro study with various local anaesthetics. Biochem Pharmacol. 2000 Apr 15;59(8):907-13. doi: 10.1016/s0006-2952(99)00394-9. [PubMed:10692555 ]
Bourd GI, Erlagaeva RS, Bolshakova TN, Gershanovitch VN: Glucose catabolite repression in Escherichia coli K12 mutants defective in methyl-alpha-d-glucoside transport. Eur J Biochem. 1975 May 6;53(2):419-27. doi: 10.1111/j.1432-1033.1975.tb04082.x. [PubMed:1095369 ]
Reizer J, Thalenfeld B, Grossowicz N: Methyl-alpha-D-glucoside uptake and splitting by a thermophilic bacillus. Nature. 1976 Apr 1;260(5550):433-5. doi: 10.1038/260433a0. [PubMed:1256584 ]
Pikis A, Hess S, Arnold I, Erni B, Thompson J: Genetic requirements for growth of Escherichia coli K12 on methyl-alpha-D-glucopyranoside and the five alpha-D-glucosyl-D-fructose isomers of sucrose. J Biol Chem. 2006 Jun 30;281(26):17900-8. doi: 10.1074/jbc.M601183200. Epub 2006 Apr 24. [PubMed:16636060 ]
Lostao MP, Berjon A, Barber A, Ponz F: On the multiplicity of glucose analogues transport systems in rat intestine. Rev Esp Fisiol. 1991 Dec;47(4):209-16. [PubMed:1812543 ]
LOTUS database [Link]

Showing NP-Card for methyl glucoside (NP0237630)

MOL for NP0237630 (methyl glucoside)

3D MOL for NP0237630 (methyl glucoside)

3D SDF for NP0237630 (methyl glucoside)

3D-SDF for NP0237630 (methyl glucoside)

PDB for NP0237630 (methyl glucoside)

3D PDB for NP0237630 (methyl glucoside)

SMILES for NP0237630 (methyl glucoside)

INCHI for NP0237630 (methyl glucoside)

Structure for NP0237630 (methyl glucoside)

3D Structure for NP0237630 (methyl glucoside)