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Record Information
Version2.0
Created at2022-09-06 20:42:53 UTC
Updated at2022-09-06 20:42:53 UTC
NP-MRD IDNP0237542
Secondary Accession NumbersNone
Natural Product Identification
Common Name10-hydroxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylic acid
DescriptionHederagenin belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. 10-hydroxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylic acid is found in Akebia quinata, Anemone cernua, Blighia sapida, Caulophyllum thalictroides, Cephalaria paphlagonica, Clematis chinensis, Clematis vitalba, Coussarea brevicaulis, Cydonia oblonga, Diospyros kaki, Drypetes inaequalis, Elattostachys apetala, Gypsophila bicolor, Hedera helix, Hedera pastuchovii, Schefflera taiwaniana, Holboellia latifolia, Holoptelea integrifolia, Juglans regia, Kalopanax septemlobus, Lantana indica, Medicago polymorpha, Morinda citrifolia, Neolamarckia cadamba, Nephelium lappaceum, Nigella glandulifera, Paeonia lactiflora, Paeonia rockii, Phyllanthus polyphyllus, Phytolacca dodecandra, Rhabdodendron amazonicum, Rhabdodendron macrophyllum, Rhaponticum carthamoides, Rosa laevigata, Rubia yunnanensis, Salvia palaestina, Sapindus saponaria, Scutellaria lateriflora, Shorea robusta, Spinacia oleracea, Stachyurus himalaicus, Stauntonia hexaphylla, Stauntonia obovatifoliola, Syzygium sandwicense, Verbena officinalis, Viburnum chingii and Viburnum erubescens. Hederagenin is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H48O4
Average Mass472.7100 Da
Monoisotopic Mass472.35526 Da
IUPAC Name10-hydroxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylic acid
Traditional Name10-hydroxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylic acid
CAS Registry NumberNot Available
SMILES
CC1(C)CCC2(CCC3(C)C(=CCC4C5(C)CCC(O)C(C)(CO)C5CCC34C)C2C1)C(O)=O
InChI Identifier
InChI=1S/C30H48O4/c1-25(2)13-15-30(24(33)34)16-14-28(5)19(20(30)17-25)7-8-22-26(3)11-10-23(32)27(4,18-31)21(26)9-12-29(22,28)6/h7,20-23,31-32H,8-18H2,1-6H3,(H,33,34)
InChI KeyPGOYMURMZNDHNS-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Akebia quinataLOTUS Database
Anemone cernuaLOTUS Database
Blighia sapidaLOTUS Database
Caulophyllum thalictroidesLOTUS Database
Cephalaria paphlagonicaLOTUS Database
Clematis chinensisLOTUS Database
Clematis vitalbaLOTUS Database
Coussarea brevicaulisLOTUS Database
Cydonia oblongaLOTUS Database
Diospyros kakiLOTUS Database
Drypetes inaequalisLOTUS Database
Elattostachys apetalaLOTUS Database
Gypsophila bicolorLOTUS Database
Hedera helixLOTUS Database
Hedera pastuchowiiLOTUS Database
Heptapleurum taiwanianumLOTUS Database
Holboellia latifoliaLOTUS Database
Holoptelea integrifoliaLOTUS Database
Juglans regiaLOTUS Database
Kalopanax septemlobusLOTUS Database
Lantana indicaLOTUS Database
Medicago polymorphaLOTUS Database
Morinda citrifoliaLOTUS Database
Neolamarckia cadambaLOTUS Database
Nephelium lappaceumLOTUS Database
Nigella glanduliferaLOTUS Database
Paeonia lactifloraLOTUS Database
Paeonia rockiiLOTUS Database
Phyllanthus polyphyllusLOTUS Database
Phytolacca dodecandraLOTUS Database
Rhabdodendron amazonicumLOTUS Database
Rhabdodendron macrophyllumLOTUS Database
Rhaponticum carthamoidesLOTUS Database
Rosa laevigataLOTUS Database
Rubia yunnanensisLOTUS Database
Salvia palaestinaLOTUS Database
Sapindus saponariaLOTUS Database
Scutellaria laterifloraLOTUS Database
Shorea robustaLOTUS Database
Spinacia oleraceaLOTUS Database
Stachyurus himalaicusLOTUS Database
Stauntonia hexaphyllaLOTUS Database
Stauntonia obovatifoliolaLOTUS Database
Syzygium sandwicenseLOTUS Database
Verbena officinalisLOTUS Database
Viburnum chingiiLOTUS Database
Viburnum erubescensLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative Parents
Substituents
  • Triterpenoid
  • Steroid
  • Cyclic alcohol
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.17ALOGPS
logP5.31ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)4.74ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area77.76 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity135.4 m³·mol⁻¹ChemAxon
Polarizability55.92 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB030901
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkHederagenin
METLIN IDNot Available
PubChem Compound258538
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]