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Record Information
Version2.0
Created at2022-09-06 20:28:54 UTC
Updated at2022-09-06 20:28:54 UTC
NP-MRD IDNP0237360
Secondary Accession NumbersNone
Natural Product Identification
Common Name4-(2-amino-3-hydroxy-2-methylpropanamido)-n-[1-(5-{[3,4-dihydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl)-2-hydroxypyrimidin-4-ylidene]benzamide
Description4-(2-Amino-3-hydroxy-2-methylpropanamido)-N-[1-(5-{[3,4-dihydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl)-2-hydroxy-1,4-dihydropyrimidin-4-ylidene]benzamide belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. 4-(2-amino-3-hydroxy-2-methylpropanamido)-n-[1-(5-{[3,4-dihydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl)-2-hydroxypyrimidin-4-ylidene]benzamide is found in Streptomyces plicatus. 4-(2-Amino-3-hydroxy-2-methylpropanamido)-N-[1-(5-{[3,4-dihydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl)-2-hydroxy-1,4-dihydropyrimidin-4-ylidene]benzamide is a very strong basic compound (based on its pKa).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC28H40N6O9
Average Mass604.6610 Da
Monoisotopic Mass604.28568 Da
IUPAC Name4-(2-amino-3-hydroxy-2-methylpropanamido)-N-[1-(5-{[3,4-dihydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl]benzamide
Traditional Name4-(2-amino-3-hydroxy-2-methylpropanamido)-N-[1-(5-{[3,4-dihydroxy-6-methyl-5-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl)-2-oxopyrimidin-4-yl]benzamide
CAS Registry NumberNot Available
SMILES
CNC1C(C)OC(OC2CCC(OC2C)N2C=CC(NC(=O)C3=CC=C(NC(=O)C(C)(N)CO)C=C3)=NC2=O)C(O)C1O
InChI Identifier
InChI=1S/C28H40N6O9/c1-14-18(43-25-23(37)22(36)21(30-4)15(2)42-25)9-10-20(41-14)34-12-11-19(33-27(34)40)32-24(38)16-5-7-17(8-6-16)31-26(39)28(3,29)13-35/h5-8,11-12,14-15,18,20-23,25,30,35-37H,9-10,13,29H2,1-4H3,(H,31,39)(H,32,33,38,40)
InChI KeyDLNZVFMLTYLOGI-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces plicatusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentAminoglycosides
Alternative Parents
Substituents
  • Aminoglycoside core
  • Acylaminobenzoic acid or derivatives
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • Benzoic acid or derivatives
  • Anilide
  • Benzoyl
  • N-arylamide
  • Pyrimidone
  • Monocyclic benzene moiety
  • Hydropyrimidine
  • Monosaccharide
  • Oxane
  • Pyrimidine
  • Benzenoid
  • Heteroaromatic compound
  • Urea
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • 1,2-aminoalcohol
  • Secondary alcohol
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Secondary amine
  • Carboxylic acid derivative
  • Secondary aliphatic amine
  • Acetal
  • Amine
  • Hydrocarbon derivative
  • Primary amine
  • Organic oxide
  • Carbonyl group
  • Primary alcohol
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Primary aliphatic amine
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.67ALOGPS
logP-1.1ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)12.09ChemAxon
pKa (Strongest Basic)8.98ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area217.3 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity153.05 m³·mol⁻¹ChemAxon
Polarizability63.85 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73744767
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]