NP-MRD: Showing NP-Card for (9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid (NP0237331)

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Record Information

Version

2.0

Created at

2022-09-06 20:26:42 UTC

Updated at

2022-09-06 20:26:42 UTC

NP-MRD ID

NP0237331

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid

Description

Ceramide (d18:1/9Z-18:1), Also known as C18:1 Cer or N-(9Z-octadecenoyl)-ceramide, belongs to the class of organic compounds known as long-chain ceramides. These are ceramides bearing a long chain fatty acid. Thus, ceramide (D18:1/9Z-18:1) Is considered to be a ceramide lipid molecule. Ceramide (d18:1/9Z-18:1) Is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. A Ceramide (d18:1/9Z-18:1) In which the ceramide N-acyl group is specified as oleoyl. (9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid is found in Trypanosoma brucei. (9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid was first documented in 1994 (PMID: 8163674). Ceramide (d18:1/9Z-18:1), With regard to humans, has been found to be associated with the diseases such as colorectal cancer; ceramide (D18:1/9Z-18:1) Has also been linked to the inborn metabolic disorder fabry disease (PMID: 14722105) (PMID: 9545298) (PMID: 15067322) (PMID: 14693694).

Structure

MOL 3D MOL SDF PDB SMILES InChI

Cer(d18:1/18:1(9Z))
  Mrv1652306122021442D          

 41 40  0  0  0  0            999 V2000
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9590    0.3595    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0969    1.5430    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8110    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5251    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2392    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9534    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6675    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3816    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0957    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8099    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5240    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5095   -1.5393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.1898   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9040   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6181   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3322   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0463   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7605   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  1  3  1  1  0  0  0
  1  4  1  6  0  0  0
  5  2  1  0  0  0  0
  4 23  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  1  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
M  END

     RDKit          3D

109108  0  0  0  0  0  0  0  0999 V2000
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  -14.4238    0.7380   -0.0645 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.3577    1.6958    0.4266 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2342    1.8436   -0.5677 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5535    0.5199   -0.8422 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4230    0.6443   -1.8262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3317    1.5828   -1.3565 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8351    0.9530   -0.0165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7757    1.7400    0.5592 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5753    1.3855    0.8368 C   0  0  0  0  0  0  0  0  0  0  0  0
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 13 64  1  0
 13 65  1  0
 12 62  1  0
 12 63  1  0
 11 60  1  0
 11 61  1  0
 10 59  1  0
  9 58  1  0
  8 56  1  0
  8 57  1  0
  7 54  1  0
  7 55  1  0
  6 52  1  0
  6 53  1  0
  5 50  1  0
  5 51  1  0
  4 48  1  0
  4 49  1  0
  3 46  1  0
  3 47  1  0
  2 44  1  0
  2 45  1  0
  1 41  1  0
  1 42  1  0
  1 43  1  0
 24 79  1  1
 25 80  1  0
 26 81  1  0
 27 82  1  0
 28 83  1  0
 28 84  1  0
 29 85  1  0
 29 86  1  0
 30 87  1  0
 30 88  1  0
 31 89  1  0
 31 90  1  0
 32 91  1  0
 32 92  1  0
 33 93  1  0
 33 94  1  0
 34 95  1  0
 34 96  1  0
 35 97  1  0
 35 98  1  0
 36 99  1  0
 36100  1  0
 37101  1  0
 37102  1  0
 38103  1  0
 38104  1  0
 39105  1  0
 39106  1  0
 40107  1  0
 40108  1  0
 40109  1  0
M  END

Cer(d18:1/18:1(9Z))
  Mrv1652306122021442D          

 41 40  0  0  0  0            999 V2000
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9590    0.3595    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0969    1.5430    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8110    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5251    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2392    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9534    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6675    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3816    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0957    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8099    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5240    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2381    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9522    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6664    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3805    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0946    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8087    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3660   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0801   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0475   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7616   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4757   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1898   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9040   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6181   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3322   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0463   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7605   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  1  3  1  1  0  0  0
  1  4  1  6  0  0  0
  5  2  1  0  0  0  0
  4 23  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  1  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0237331

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@](CO)(NC(=O)CCCCCCC\C=C/CCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C36H69NO3/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-36(40)37-34(33-38)35(39)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,29,31,34-35,38-39H,3-16,19-28,30,32-33H2,1-2H3,(H,37,40)/b18-17-,31-29+/t34-,35+/m0/s1

> <INCHI_KEY>
OBFSLMQLPNKVRW-RHPAUOISSA-N

> <FORMULA>
C36H69NO3

> <MOLECULAR_WEIGHT>
563.938

> <EXACT_MASS>
563.527745079

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
109

> <JCHEM_AVERAGE_POLARIZABILITY>
75.85065310543867

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(9Z)-N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enamide

> <ALOGPS_LOGP>
9.82

> <JCHEM_LOGP>
11.392570817000001

> <ALOGPS_LOGS>
-7.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.240006745673298

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.630360218699394

> <JCHEM_PKA_STRONGEST_BASIC>
-1.0489347908856081

> <JCHEM_POLAR_SURFACE_AREA>
69.56

> <JCHEM_REFRACTIVITY>
176.0943

> <JCHEM_ROTATABLE_BOND_COUNT>
31

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.52e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-(oleoyl)-ceramide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-JUN-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: Cer(d18:1/18:1(9Z))                               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-JUN-20         0                                  
HETATM    1  C   UNK     0      -4.447   0.670   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.113   1.440   0.000  0.00  0.00           C+0
HETATM    3  H   UNK     0      -3.677  -0.663   0.000  0.00  0.00           H+0
HETATM    4  N   UNK     0      -5.217  -0.663   0.000  0.00  0.00           N+0
HETATM    5  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -5.781   1.440   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -5.781   2.880   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -7.114   0.669   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -8.447   1.440   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -9.780   0.669   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -11.113   1.440   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -12.446   0.669   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -13.779   1.440   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -15.112   0.669   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -16.445   1.440   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -17.778   0.669   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -19.111   1.440   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -20.444   0.669   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -21.777   1.440   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -23.110   0.669   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -24.443   1.440   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -25.776   0.669   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -6.551  -1.433   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -6.551  -2.873   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -7.884  -0.662   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -9.217  -1.433   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -10.550  -0.662   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -11.883  -1.433   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -13.216  -0.662   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -14.549  -1.433   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -15.882  -0.662   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -17.215  -1.433   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -18.755  -1.433   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -20.088  -0.662   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -21.421  -1.433   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -22.754  -0.662   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -24.087  -1.433   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -25.420  -0.662   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -26.753  -1.433   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -28.086  -0.662   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -29.420  -1.433   0.000  0.00  0.00           C+0
CONECT    1    2    3    4    6                                             
CONECT    2    1    5                                                       
CONECT    3    1                                                            
CONECT    4    1   23                                                       
CONECT    5    2                                                            
CONECT    6    1    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23    4   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   80    0
END

View in JSmol

Synonyms

Value	Source
C18:1 Cer	ChEBI
Cer(d18:1/18:1(9Z))	ChEBI
N-(9Z-Octadecenoyl)-ceramide	ChEBI
N-(9Z-Octadecenoyl)-sphing-4-enine	ChEBI
N-(Oleoyl)-ceramide	ChEBI
N-[(9Z)-Octadecenoyl]sphing-4-enine	ChEBI
N-[(9Z)-Octadecenoyl]sphingosine	ChEBI
N-Oleoylsphing-4-enine	ChEBI
(2S,3R,4E)-2-acylamino-1,3-Octadec-4-enediol	HMDB
(2S,3R,4E)-2-Acylaminooctadec-4-ene-1,3-diol	HMDB
Cer	HMDB
Ceramide	HMDB
N-Acylsphingosine	HMDB
N-[(1S,2R,3E)-2-Hydroxy-1-(hydroxymethyl)-3-heptadecenyl]-octadecanamide	HMDB
N-Oleoylsphingosine	MeSH, HMDB
Oleoylsphingosine	MeSH, HMDB
C18:1-Ceramide	HMDB
Cer d18:1/18:1	HMDB
Cer d18:1/18:1(9Z)	HMDB
Cer(d18:1/18:1)	HMDB
Ceramide (d18:1,C18:1(9Z))	HMDB
Ceramide (d18:1/18:1(9Z))	HMDB
Ceramide (d18:1/18:1)	HMDB
Ceramide (d18:1/9Z-18:1)	HMDB
Ceramide 18:1	HMDB
Ceramide(d18:1/18:1(9Z))	HMDB
Ceramide(d18:1/18:1)	HMDB
Ceramide(d18:1/9Z-18:1)	HMDB
D-erythro-1,3-Dihydroxy-2-(cis-9-octadecenoylamido)-trans-4-octadecene	HMDB
N-Oleoyl-4-sphingenine	HMDB
N-Oleoyl-D-sphingosine	HMDB

Chemical Formula

C₃₆H₆₉NO₃

Average Mass

563.9380 Da

Monoisotopic Mass

563.52775 Da

IUPAC Name

(9Z)-N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enamide

Traditional Name

N-(oleoyl)-ceramide

CAS Registry Number

Not Available

SMILES

[H][C@@](CO)(NC(=O)CCCCCCC\C=C/CCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC

InChI Identifier

InChI=1S/C36H69NO3/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-36(40)37-34(33-38)35(39)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,29,31,34-35,38-39H,3-16,19-28,30,32-33H2,1-2H3,(H,37,40)/b18-17-,31-29+/t34-,35+/m0/s1

InChI Key

OBFSLMQLPNKVRW-RHPAUOISSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trypanosoma brucei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain ceramides. These are ceramides bearing a long chain fatty acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Sphingolipids

Sub Class

Ceramides

Direct Parent

Long-chain ceramides

Alternative Parents

Substituents

Long-chain ceramide
Fatty amide
N-acyl-amine
Fatty acyl
Carboxamide group
Secondary alcohol
Secondary carboxylic acid amide
Carboxylic acid derivative
Primary alcohol
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Alcohol
Organic nitrogen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

N-acylsphingosine (CHEBI:77996 )
N-acylsphingosines (ceramides) (LMSP02010003 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	9.82	ALOGPS
logP	11.39	ChemAxon
logS	-7.4	ALOGPS
pKa (Strongest Acidic)	13.63	ChemAxon
pKa (Strongest Basic)	-1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	69.56 Å²	ChemAxon
Rotatable Bond Count	31	ChemAxon
Refractivity	176.09 m³·mol⁻¹	ChemAxon
Polarizability	75.85 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0004948

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB023535

KNApSAcK ID

Not Available

Chemspider ID

4446676

KEGG Compound ID

C00195

BioCyc ID

CERAMIDE

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

7201

PubChem Compound

5283563

PDB ID

Not Available

ChEBI ID

77996

Good Scents ID

Not Available

References

General References

Deguchi H, Yegneswaran S, Griffin JH: Sphingolipids as bioactive regulators of thrombin generation. J Biol Chem. 2004 Mar 26;279(13):12036-42. Epub 2004 Jan 13. [PubMed:14722105 ]
Watanabe R, Wu K, Paul P, Marks DL, Kobayashi T, Pittelkow MR, Pagano RE: Up-regulation of glucosylceramide synthase expression and activity during human keratinocyte differentiation. J Biol Chem. 1998 Apr 17;273(16):9651-5. doi: 10.1074/jbc.273.16.9651. [PubMed:9545298 ]
Mari M, Colell A, Morales A, Paneda C, Varela-Nieto I, Garcia-Ruiz C, Fernandez-Checa JC: Acidic sphingomyelinase downregulates the liver-specific methionine adenosyltransferase 1A, contributing to tumor necrosis factor-induced lethal hepatitis. J Clin Invest. 2004 Mar;113(6):895-904. doi: 10.1172/JCI19852. [PubMed:15067322 ]
Adams JM 2nd, Pratipanawatr T, Berria R, Wang E, DeFronzo RA, Sullards MC, Mandarino LJ: Ceramide content is increased in skeletal muscle from obese insulin-resistant humans. Diabetes. 2004 Jan;53(1):25-31. doi: 10.2337/diabetes.53.1.25. [PubMed:14693694 ]
Holleran WM, Ginns EI, Menon GK, Grundmann JU, Fartasch M, McKinney CE, Elias PM, Sidransky E: Consequences of beta-glucocerebrosidase deficiency in epidermis. Ultrastructure and permeability barrier alterations in Gaucher disease. J Clin Invest. 1994 Apr;93(4):1756-64. doi: 10.1172/JCI117160. [PubMed:8163674 ]
LOTUS database [Link]

Showing NP-Card for (9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid (NP0237331)

MOL for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

3D MOL for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

3D SDF for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

3D-SDF for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

PDB for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

3D PDB for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

SMILES for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

INCHI for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

Structure for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)

3D Structure for NP0237331 ((9z)-n-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]octadec-9-enimidic acid)