NP-MRD: Showing NP-Card for (1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate (NP0237252)

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Record Information

Version

2.0

Created at

2022-09-06 20:20:24 UTC

Updated at

2022-09-06 20:20:24 UTC

NP-MRD ID

NP0237252

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate

Description

3-Methyl-2-butenoic acid (1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4,11-dimethyl-4-(4-methyl-4-methoxy-2-pentenyl)-8-oxo-2,6,9-cycloundecatriene-1-yl ester belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. (1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate is found in Viburnum chingii. Based on a literature review very few articles have been published on 3-Methyl-2-butenoic acid (1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4,11-dimethyl-4-(4-methyl-4-methoxy-2-pentenyl)-8-oxo-2,6,9-cycloundecatriene-1-yl ester.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062222202D          

 32 32  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309062222202D          

 32 32  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0237252

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(C)(C)\C=C\C[C@@]1(C)C\C=C(CO)/C(=O)/C=C/[C@@](C)(O)[C@H](OC(=O)C=C(C)C)\C=C\1

> <INCHI_IDENTIFIER>
InChI=1S/C26H38O6/c1-19(2)17-23(29)32-22-11-15-25(5,13-8-12-24(3,4)31-7)14-9-20(18-27)21(28)10-16-26(22,6)30/h8-12,15-17,22,27,30H,13-14,18H2,1-7H3/b12-8+,15-11+,16-10+,20-9-/t22-,25+,26-/m1/s1

> <INCHI_KEY>
IFNQWFQNCIBEMZ-GGNRDMSCSA-N

> <FORMULA>
C26H38O6

> <MOLECULAR_WEIGHT>
446.584

> <EXACT_MASS>
446.266838944

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
49.83271541957458

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate

> <JCHEM_LOGP>
4.269417311

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.983403998555666

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.526890792955701

> <JCHEM_PKA_STRONGEST_BASIC>
-2.813236009538101

> <JCHEM_POLAR_SURFACE_AREA>
93.06000000000002

> <JCHEM_REFRACTIVITY>
131.32949999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       9.925   2.196   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       8.985   3.417   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       7.459   3.213   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.255   4.740   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.662   1.687   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.932   3.010   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.993   4.230   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.466   4.027   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.879   2.603   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.525   3.336   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.356   2.168   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.399   0.629   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.507  -0.641   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       7.011  -0.312   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       8.049  -1.450   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       7.582  -2.918   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.553  -1.121   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.590  -2.259   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.095  -1.930   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.123  -3.727   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.072  -2.119   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.602  -2.291   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.168  -3.656   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       3.575  -2.480   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.513  -1.365   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.016  -1.727   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       0.581  -3.204   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -0.046  -0.611   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.542  -0.973   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -2.604   0.142   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       0.390   0.866   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.009   1.333   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11   32                                             
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   21                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   13   22   23   24                                             
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   21   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   31                                                  
CONECT   29   28   30                                                       
CONECT   30   29                                                            
CONECT   31   28   32                                                       
CONECT   32   31    9                                                       
MASTER        0    0    0    0    0    0    0    0   32    0   64    0
END

View in JSmol

Synonyms

Value	Source
3-Methyl-2-butenoate (1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4,11-dimethyl-4-(4-methyl-4-methoxy-2-pentenyl)-8-oxo-2,6,9-cycloundecatriene-1-yl ester	Generator

Chemical Formula

C₂₆H₃₈O₆

Average Mass

446.5840 Da

Monoisotopic Mass

446.26684 Da

IUPAC Name

(1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate

Traditional Name

(1R,2E,4S,6Z,9E,11R)-11-hydroxy-7-(hydroxymethyl)-4-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate

CAS Registry Number

Not Available

SMILES

COC(C)(C)\C=C\C[C@@]1(C)C\C=C(CO)/C(=O)/C=C/[C@@](C)(O)[C@H](OC(=O)C=C(C)C)\C=C\1

InChI Identifier

InChI=1S/C26H38O6/c1-19(2)17-23(29)32-22-11-15-25(5,13-8-12-24(3,4)31-7)14-9-20(18-27)21(28)10-16-26(22,6)30/h8-12,15-17,22,27,30H,13-14,18H2,1-7H3/b12-8+,15-11+,16-10+,20-9-/t22-,25+,26-/m1/s1

InChI Key

IFNQWFQNCIBEMZ-GGNRDMSCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Viburnum chingii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Fatty acid ester
Fatty acyl
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Carboxylic acid ester
Cyclic ketone
Ketone
Carboxylic acid derivative
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Carbonyl group
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Alcohol
Organooxygen compound
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.27	ChemAxon
pKa (Strongest Acidic)	13.53	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	131.33 m³·mol⁻¹	ChemAxon
Polarizability	49.83 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

52953127

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate (NP0237252)

MOL for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

3D MOL for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

3D SDF for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

3D-SDF for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

PDB for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

3D PDB for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

SMILES for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

INCHI for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

Structure for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)

3D Structure for NP0237252 ((1r,2e,4s,6z,9e,11r)-11-hydroxy-7-(hydroxymethyl)-4-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-4,11-dimethyl-8-oxocycloundeca-2,6,9-trien-1-yl 3-methylbut-2-enoate)