NP-MRD: Showing NP-Card for (1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione (NP0237063)

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Record Information

Version

2.0

Created at

2022-09-06 20:06:42 UTC

Updated at

2022-09-06 20:06:42 UTC

NP-MRD ID

NP0237063

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione

Description

Pyrenolide A belongs to the class of organic compounds known as enoate esters. These are an alpha,beta-unsaturated carboxylic ester of general formula R1C(R2)=C(R3)C(=O)OR4 (R4= organyl compound) in which the ester C=O function is conjugated to a C=C double bond at the alpha,beta position. (1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione is found in Pyrenophora teres. Based on a literature review very few articles have been published on pyrenolide A.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062222062D          

 14 15  0  0  1  0            999 V2000
    3.3636    0.6047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8335   -0.0734    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1858    0.6725    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0080    0.7403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3604    1.4863    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4779    0.0622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1255   -0.6838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3033   -0.7516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7731   -1.4297    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9509   -1.4975    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1287   -1.5653    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6589   -0.8872    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1890   -0.2091    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0113   -0.1412    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  8  1  4  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 13  1  1  0  0  0
  2 14  1  0  0  0  0
 12 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0237063

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1OC(=O)\C=C/C(=O)C=C[C@H]2O[C@@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C10H10O4/c1-6-10-8(14-10)4-2-7(11)3-5-9(12)13-6/h2-6,8,10H,1H3/b4-2?,5-3-/t6-,8-,10+/m1/s1

> <INCHI_KEY>
RAWBOGKVAAFNEW-DFVWICRRSA-N

> <FORMULA>
C10H10O4

> <MOLECULAR_WEIGHT>
194.186

> <EXACT_MASS>
194.057908802

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
24

> <JCHEM_AVERAGE_POLARIZABILITY>
18.332811027582245

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2R,5Z,10R)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione

> <JCHEM_LOGP>
1.3662812073333335

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.479821508736656

> <JCHEM_PKA_STRONGEST_BASIC>
-4.250448032473087

> <JCHEM_POLAR_SURFACE_AREA>
55.900000000000006

> <JCHEM_REFRACTIVITY>
49.59550000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5Z,10R)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       6.279   1.129   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.156  -0.137   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       7.814   1.255   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       9.348   1.382   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      10.006   2.774   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      10.225   0.116   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.568  -1.276   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.033  -1.403   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       8.910  -2.669   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       7.375  -2.795   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.840  -2.922   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.963  -1.656   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       4.086  -0.390   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       5.621  -0.264   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   14                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12   14                                                       
CONECT   14   13    2   12                                                  
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₀H₁₀O₄

Average Mass

194.1860 Da

Monoisotopic Mass

194.05791 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H]1OC(=O)\C=C/C(=O)C=C[C@H]2O[C@@H]12

InChI Identifier

InChI=1S/C10H10O4/c1-6-10-8(14-10)4-2-7(11)3-5-9(12)13-6/h2-6,8,10H,1H3/b4-2?,5-3-/t6-,8-,10+/m1/s1

InChI Key

RAWBOGKVAAFNEW-DFVWICRRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pyrenophora teres	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as enoate esters. These are an alpha,beta-unsaturated carboxylic ester of general formula R1C(R2)=C(R3)C(=O)OR4 (R4= organyl compound) in which the ester C=O function is conjugated to a C=C double bond at the alpha,beta position.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Carboxylic acid derivatives

Direct Parent

Enoate esters

Alternative Parents

Substituents

Enoate ester
Cyclic ketone
Lactone
Ketone
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139586081

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione (NP0237063)

MOL for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

3D MOL for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

3D SDF for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

3D-SDF for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

PDB for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

3D PDB for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

SMILES for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

INCHI for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

Structure for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)

3D Structure for NP0237063 ((1s,2r,5z,10r)-2-methyl-3,11-dioxabicyclo[8.1.0]undeca-5,8-diene-4,7-dione)