NP-MRD: Showing NP-Card for (2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one (NP0235697)

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Record Information

Version

2.0

Created at

2022-09-06 18:24:53 UTC

Updated at

2022-09-06 18:24:54 UTC

NP-MRD ID

NP0235697

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one

Description

(2R,9S,11R)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]Dodec-5-en-12-one belongs to the class of organic compounds known as n-alkylpyrrolidines. N-alkylpyrrolidines are compounds containing a pyrrolidine moiety that is substituted at the N1-position with an alkyl group. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. (2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one is found in Hemerocallis fulva. Based on a literature review very few articles have been published on (2R,9S,11R)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]Dodec-5-en-12-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062220242D          

 14 16  0  0  1  0            999 V2000
    1.6730   -2.1914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5015   -1.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7478   -1.0488    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0333   -1.4613    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8341   -0.2284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6410   -0.0568    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0535    0.6576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8785    0.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2910   -0.0568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0980   -0.2284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1842   -1.0488    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4306   -1.3844    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8785   -0.7713    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0535   -0.7713    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  1  1  0  0  0
  2 14  1  0  0  0  0
  6 14  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0235697

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@@H]1C[C@@H]2OCC3=CCO[C@H]3N2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H11NO4/c11-6-3-7-10(8(6)12)9-5(4-14-7)1-2-13-9/h1,6-7,9,11H,2-4H2/t6-,7+,9-/m1/s1

> <INCHI_KEY>
JQWXEAIVVRFMLW-BKPPORCPSA-N

> <FORMULA>
C9H11NO4

> <MOLECULAR_WEIGHT>
197.19

> <EXACT_MASS>
197.068807838

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
18.91105912920245

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,9S,11R)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0^{2,6}]dodec-5-en-12-one

> <JCHEM_LOGP>
-0.694786739666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.020970235069367

> <JCHEM_PKA_STRONGEST_BASIC>
-3.664426019949733

> <JCHEM_POLAR_SURFACE_AREA>
59.00000000000001

> <JCHEM_REFRACTIVITY>
45.896800000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,9S,11R)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0^{2,6}]dodec-5-en-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  O   UNK     0       3.123  -4.091   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.803  -2.584   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.396  -1.958   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.062  -2.728   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.557  -0.426   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.063  -0.106   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.833   1.228   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.373   1.228   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.143  -0.106   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.650  -0.426   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.811  -1.958   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       6.404  -2.584   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       5.373  -1.440   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       3.833  -1.440   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   14                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   13                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    9   14                                                  
CONECT   14   13    2    6                                                  
MASTER        0    0    0    0    0    0    0    0   14    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₉H₁₁NO₄

Average Mass

197.1900 Da

Monoisotopic Mass

197.06881 Da

IUPAC Name

(2R,9S,11R)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0^{2,6}]dodec-5-en-12-one

Traditional Name

(2R,9S,11R)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0^{2,6}]dodec-5-en-12-one

CAS Registry Number

Not Available

SMILES

O[C@@H]1C[C@@H]2OCC3=CCO[C@H]3N2C1=O

InChI Identifier

InChI=1S/C9H11NO4/c11-6-3-7-10(8(6)12)9-5(4-14-7)1-2-13-9/h1,6-7,9,11H,2-4H2/t6-,7+,9-/m1/s1

InChI Key

JQWXEAIVVRFMLW-BKPPORCPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hemerocallis fulva	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-alkylpyrrolidines. N-alkylpyrrolidines are compounds containing a pyrrolidine moiety that is substituted at the N1-position with an alkyl group. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolidines

Sub Class

N-alkylpyrrolidines

Direct Parent

N-alkylpyrrolidines

Alternative Parents

Substituents

1,3-oxazinane
Oxazinane
Pyrrolidone
N-alkylpyrrolidine
2-pyrrolidone
Dihydrofuran
Tertiary carboxylic acid amide
Carboxamide group
Lactam
Secondary alcohol
Carboxylic acid derivative
Oxacycle
Azacycle
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organic nitrogen compound
Organic oxygen compound
Carbonyl group
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.69	ChemAxon
pKa (Strongest Acidic)	13.02	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	59 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	45.9 m³·mol⁻¹	ChemAxon
Polarizability	18.91 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8165871

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9990289

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one (NP0235697)

MOL for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

3D MOL for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

3D SDF for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

3D-SDF for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

PDB for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

3D PDB for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

SMILES for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

INCHI for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

Structure for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)

3D Structure for NP0235697 ((2r,9s,11r)-11-hydroxy-3,8-dioxa-1-azatricyclo[7.3.0.0²,⁶]dodec-5-en-12-one)