NP-MRD: Showing NP-Card for (1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol (NP0235627)

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Record Information

Version

2.0

Created at

2022-09-06 18:19:37 UTC

Updated at

2022-09-06 18:19:37 UTC

NP-MRD ID

NP0235627

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol

Description

18-Hydroxy-14-O-methylgadesine belongs to the class of organic compounds known as aconitane-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hexacyclic aconitane skeleton. These compounds have no oxygen functionality at the C7 atom. (1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol is found in Consolida oliveriana and Consolida orientalis. (1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol was first documented in 2004 (PMID: 15133202). Based on a literature review very few articles have been published on 18-hydroxy-14-O-methylgadesine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062220192D          

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M  END

     RDKit          2D

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M  END


  Mrv1652309062220192D          

 31 37  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0235627

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCN1[C@H]2[C@@]3(O)[C@@H](OC)[C@H]4C2([C@@H]2C[C@@H]5[C@H](O)[C@@H]2[C@]3(O)C[C@@H]5OC)[C@@H]2CC[C@@]4(CO)[C@@H]1O2

> <INCHI_IDENTIFIER>
InChI=1S/C23H35NO7/c1-4-24-18-22-11-7-10-12(29-2)8-21(27,14(11)15(10)26)23(18,28)17(30-3)16(22)20(9-25)6-5-13(22)31-19(20)24/h10-19,25-28H,4-9H2,1-3H3/t10-,11+,12-,13-,14+,15-,16+,17-,18+,19-,20-,21+,22?,23-/m0/s1

> <INCHI_KEY>
GMIJIHKENVWFFK-ASRZDHOVSA-N

> <FORMULA>
C23H35NO7

> <MOLECULAR_WEIGHT>
437.533

> <EXACT_MASS>
437.241352471

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
47.861708828772876

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,3R,5S,7S,10R,11S,12S,13R,14R,16S,17R,18S,19R)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0^{2,7}.0^{2,11}.0^{3,13}.0^{5,10}.0^{14,19}]icosane-13,14,18-triol

> <JCHEM_LOGP>
-1.9237834996666678

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.85018792884389

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.196908585517122

> <JCHEM_PKA_STRONGEST_BASIC>
5.491487045888746

> <JCHEM_POLAR_SURFACE_AREA>
111.85000000000002

> <JCHEM_REFRACTIVITY>
108.33239999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3R,5S,7S,10R,11S,12S,13R,14R,16S,17R,18S,19R)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0^{2,7}.0^{2,11}.0^{3,13}.0^{5,10}.0^{14,19}]icosane-13,14,18-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.150  -2.909   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.700  -2.391   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      -1.423  -0.876   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0      -2.498   0.300   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -1.303   2.101   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.899   0.959   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.798   0.833   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.819   2.382   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.145   2.127   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.552   3.549   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -2.486   4.773   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.549   0.940   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.124  -0.999   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.526  -2.395   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.359  -3.656   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.501  -0.471   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.165  -1.860   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -0.026  -0.168   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.058   1.659   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.482   2.650   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.818   3.691   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.493   2.509   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.243   1.008   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       6.772   0.829   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       7.692   2.064   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.249  -0.180   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.806   0.285   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       2.970  -1.247   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       2.615   1.824   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.753   3.257   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       3.669   4.795   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   19                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    4   10   12                                             
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    9   13   19                                                  
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17   18   27                                             
CONECT   17   16                                                            
CONECT   18   16    3   19                                                  
CONECT   19   18    6   12   20                                             
CONECT   20   19   21   29                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   30                                                  
CONECT   23   22   24   26                                                  
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   23   27                                                       
CONECT   27   26   16   28   29                                             
CONECT   28   27                                                            
CONECT   29   27   20   30                                                  
CONECT   30   29   22   31                                                  
CONECT   31   30                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₃₅NO₇

Average Mass

437.5330 Da

Monoisotopic Mass

437.24135 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CCN1[C@H]2[C@@]3(O)[C@@H](OC)[C@H]4C2([C@@H]2C[C@@H]5[C@H](O)[C@@H]2[C@]3(O)C[C@@H]5OC)[C@@H]2CC[C@@]4(CO)[C@@H]1O2

InChI Identifier

InChI=1S/C23H35NO7/c1-4-24-18-22-11-7-10-12(29-2)8-21(27,14(11)15(10)26)23(18,28)17(30-3)16(22)20(9-25)6-5-13(22)31-19(20)24/h10-19,25-28H,4-9H2,1-3H3/t10-,11+,12-,13-,14+,15-,16+,17-,18+,19-,20-,21+,22?,23-/m0/s1

InChI Key

GMIJIHKENVWFFK-ASRZDHOVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Consolida oliveriana	LOTUS Database	35616633
Consolida orientalis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aconitane-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hexacyclic aconitane skeleton. These compounds have no oxygen functionality at the C7 atom.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Aconitane-type diterpenoid alkaloids

Alternative Parents

Substituents

Aconitane-type diterpenoid alkaloid
Quinolidine
Alkaloid or derivatives
Azepane
Piperidine
Oxazinane
Oxane
1,3-oxazinane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Hemiaminal
Oxacycle
Azacycle
Organoheterocyclic compound
Polyol
Ether
Dialkyl ether
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Organonitrogen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00031520

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

129693803

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Alva A, Grandez M, Madinaveitia A, de la Fuente G, Gavin J: Three new norditerpenoid alkaloids from Consolida orientalis. Chem Pharm Bull (Tokyo). 2004 May;52(5):530-4. doi: 10.1248/cpb.52.530. [PubMed:15133202 ]
LOTUS database [Link]

Showing NP-Card for (1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol (NP0235627)

MOL for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

3D MOL for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

3D SDF for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

3D-SDF for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

PDB for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

3D PDB for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

SMILES for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

INCHI for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

Structure for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)

3D Structure for NP0235627 ((1r,3r,5s,7s,10r,11s,12s,13r,14r,16s,17r,18s,19r)-4-ethyl-10-(hydroxymethyl)-12,16-dimethoxy-6-oxa-4-azaheptacyclo[15.2.1.0²,⁷.0²,¹¹.0³,¹³.0⁵,¹⁰.0¹⁴,¹⁹]icosane-13,14,18-triol)