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Record Information
Version2.0
Created at2022-09-06 18:15:36 UTC
Updated at2022-09-06 18:15:36 UTC
NP-MRD IDNP0235577
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,2s,19r,22r)-7,8,9,12,13,14,20,28,29,30,33,34,35-tridecahydroxy-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.0²,¹⁹.0⁵,¹⁰.0¹¹,¹⁶.0²⁶,³¹.0³²,³⁷]nonatriaconta-5(10),6,8,11,13,15,26(31),27,29,32,34,36-dodecaene-4,17,25,38-tetrone
DescriptionPedunculagin, also known as platycaryanin D, belongs to the class of organic compounds known as hydrolyzable tannins. These are tannins with a structure characterized by either of the following models. In model 1, the structure contains galloyl units (in some cases, shikimic acid units) that are linked to diverse polyol carbohydrate-, catechin-, or triterpenoid units. In model 2, contains at least two galloyl units C-C coupled to each other, and do not contain a glycosidically linked catechin unit. (1r,2s,19r,22r)-7,8,9,12,13,14,20,28,29,30,33,34,35-tridecahydroxy-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.0²,¹⁹.0⁵,¹⁰.0¹¹,¹⁶.0²⁶,³¹.0³²,³⁷]nonatriaconta-5(10),6,8,11,13,15,26(31),27,29,32,34,36-dodecaene-4,17,25,38-tetrone is found in Alchemilla xanthochlora, Alnus hirsuta, Alnus japonica, Alnus sieboldiana, Betula pubescens, Bredia tuberculata, Camellia japonica, Camellia oleifera, Camptotheca acuminata, Carpinus laxiflora, Castanea mollissima, Combretum indicum, Elaeagnus umbellata, Eucalyptus alba, Eucalyptus consideniana, Eucalyptus nitens, Euphorbia prostrata, Euphorbia thymifolia, Fragaria ananassa, Geum aleppicum, Geum japonicum, Hippophae rhamnoides, Juglans regia, Kunzea ambigua, Liquidambar formosana, Liquidambar styraciflua, Lythrum salicaria, Melastoma dodecandrum, Melastoma malabathricum, Paeonia lactiflora, Paeonia obovata, Platycarya strobilacea, Potentilla kleiniana, Psidium guajava, Punica granatum, Quercus acutissima, Quercus aliena, Quercus petraea, Quercus phillyraeoides, Quercus robur, Quercus suber, Rhoiptelea chiliantha, Rosa laevigata, Rosa roxburghii, Rosa rugosa, Rubus buergeri, Rubus coreanus, Rubus sanctus, Sanguisorba officinalis, Schima wallichii, Siphoneugena densiflora, Stachyurus praecox, Syzygium aqueum, Tibouchina multiflora and Pleroma semidecandrum. (1r,2s,19r,22r)-7,8,9,12,13,14,20,28,29,30,33,34,35-tridecahydroxy-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.0²,¹⁹.0⁵,¹⁰.0¹¹,¹⁶.0²⁶,³¹.0³²,³⁷]nonatriaconta-5(10),6,8,11,13,15,26(31),27,29,32,34,36-dodecaene-4,17,25,38-tetrone was first documented in 2021 (PMID: 34975489). Based on a literature review a small amount of articles have been published on Pedunculagin (PMID: 36014555) (PMID: 35489264) (PMID: 35362883) (PMID: 35158268).
Structure
Thumb
Synonyms
ValueSource
Cyclic 2,3:4,6-bis(4,4',5,5',6,6'-hexahydroxydiphenate)-alpha-D-glucopyranoseMeSH
Platycaryanin DMeSH
Pedunculagin IMeSH
Pedunculagin IIMeSH
Pedunculagin, R-isomerMeSH
alpha-PedunculaginMeSH
Cyclic 2,3:4,6-bis(4,4',5,5',6,6'-hexahydroxydiphenate)-beta-D-glucopyranoseMeSH
Chemical FormulaC34H24O22
Average Mass784.5440 Da
Monoisotopic Mass784.07592 Da
IUPAC Name(1R,2S,19R,22R)-7,8,9,12,13,14,20,28,29,30,33,34,35-tridecahydroxy-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.0^{2,19}.0^{5,10}.0^{11,16}.0^{26,31}.0^{32,37}]nonatriaconta-5,7,9,11,13,15,26,28,30,32,34,36-dodecaene-4,17,25,38-tetrone
Traditional Name(1R,2S,19R,22R)-7,8,9,12,13,14,20,28,29,30,33,34,35-tridecahydroxy-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.0^{2,19}.0^{5,10}.0^{11,16}.0^{26,31}.0^{32,37}]nonatriaconta-5,7,9,11,13,15,26,28,30,32,34,36-dodecaene-4,17,25,38-tetrone
CAS Registry NumberNot Available
SMILES
OC1O[C@@H]2COC(=O)C3=C(C(O)=C(O)C(O)=C3)C3=C(O)C(O)=C(O)C=C3C(=O)O[C@H]2[C@@H]2OC(=O)C3=C(C(O)=C(O)C(O)=C3)C3=C(O)C(O)=C(O)C=C3C(=O)O[C@@H]12
InChI Identifier
InChI=1S/C34H24O22/c35-10-1-6-15(23(43)19(10)39)16-7(2-11(36)20(40)24(16)44)31(48)54-27-14(5-52-30(6)47)53-34(51)29-28(27)55-32(49)8-3-12(37)21(41)25(45)17(8)18-9(33(50)56-29)4-13(38)22(42)26(18)46/h1-4,14,27-29,34-46,51H,5H2/t14-,27-,28+,29-,34?/m1/s1
InChI KeyIYMHVUYNBVWXKH-ZITZVVOASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Alchemilla xanthochloraLOTUS Database
Alnus hirsutaLOTUS Database
Alnus japonicaLOTUS Database
Alnus sieboldianaLOTUS Database
Betula pubescensLOTUS Database
Bredia tuberculataLOTUS Database
Camellia japonicaLOTUS Database
Camellia oleiferaLOTUS Database
Camptotheca acuminataLOTUS Database
Carpinus laxifloraLOTUS Database
Castanea mollissimaLOTUS Database
Combretum indicumLOTUS Database
Elaeagnus umbellataLOTUS Database
Eucalyptus albaLOTUS Database
Eucalyptus considenianaLOTUS Database
Eucalyptus nitensLOTUS Database
Euphorbia prostrataLOTUS Database
Euphorbia thymifoliaLOTUS Database
Fragaria x ananassaLOTUS Database
Geum aleppicumLOTUS Database
Geum japonicumLOTUS Database
Hippophae rhamnoidesLOTUS Database
Juglans regiaLOTUS Database
Kunzea ambiguaLOTUS Database
Liquidambar formosanaLOTUS Database
Liquidambar styracifluaLOTUS Database
Lythrum salicariaLOTUS Database
Melastoma dodecandrumLOTUS Database
Melastoma malabathricumLOTUS Database
Paeonia lactifloraLOTUS Database
Paeonia obovataLOTUS Database
Platycarya strobilaceaLOTUS Database
Potentilla kleinianaLOTUS Database
Psidium guajavaLOTUS Database
Punica granatumLOTUS Database
Quercus acutissimaLOTUS Database
Quercus alienaLOTUS Database
Quercus petraeaLOTUS Database
Quercus phillyraeoidesLOTUS Database
Quercus roburLOTUS Database
Quercus suberLOTUS Database
Rhoiptelea chilianthaLOTUS Database
Rosa laevigataLOTUS Database
Rosa roxburghiiLOTUS Database
Rosa rugosaLOTUS Database
Rubus buergeriLOTUS Database
Rubus coreanusLOTUS Database
Rubus sanctusLOTUS Database
Sanguisorba officinalisLOTUS Database
Schima wallichiiLOTUS Database
Siphoneugena densifloraLOTUS Database
Stachyurus praecoxLOTUS Database
Syzygium aqueumLOTUS Database
Tibouchina multifloraLOTUS Database
Tibouchina semidecandraLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydrolyzable tannins. These are tannins with a structure characterized by either of the following models. In model 1, the structure contains galloyl units (in some cases, shikimic acid units) that are linked to diverse polyol carbohydrate-, catechin-, or triterpenoid units. In model 2, contains at least two galloyl units C-C coupled to each other, and do not contain a glycosidically linked catechin unit.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassTannins
Sub ClassHydrolyzable tannins
Direct ParentHydrolyzable tannins
Alternative Parents
Substituents
  • Hydrolyzable tannin
  • Tetracarboxylic acid or derivatives
  • Gallic acid or derivatives
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Benzenoid
  • Monosaccharide
  • Oxane
  • Carboxylic acid ester
  • Hemiacetal
  • Lactone
  • Carboxylic acid derivative
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organic oxide
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.95ChemAxon
pKa (Strongest Acidic)7.25ChemAxon
pKa (Strongest Basic)-6.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count13ChemAxon
Polar Surface Area377.42 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity177.14 m³·mol⁻¹ChemAxon
Polarizability69.79 ųChemAxon
Number of Rings7ChemAxon
Rule of FiveNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00002932
Chemspider ID391045
KEGG Compound IDC10236
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkPedunculagin
METLIN IDNot Available
PubChem Compound442688
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDrw1588891
References
General References
  1. Moon JH, Kim JM, Lee U, Kang JY, Kim MJ, Lee HL, Jeong HR, Go MJ, Kim HJ, Park HW, Kim CW, Park SJ, Heo HJ: Walnut Prevents Cognitive Impairment by Regulating the Synaptic and Mitochondrial Dysfunction via JNK Signaling and Apoptosis Pathway in High-Fat Diet-Induced C57BL/6 Mice. Molecules. 2022 Aug 20;27(16):5316. doi: 10.3390/molecules27165316. [PubMed:36014555 ]
  2. Zhang Z, Peng Y, Meng W, Pei L, Zhang X: Browning inhibition of seabuckthorn leaf extract on fresh-cut potato sticks during cold storage. Food Chem. 2022 Sep 30;389:133076. doi: 10.1016/j.foodchem.2022.133076. Epub 2022 Apr 26. [PubMed:35489264 ]
  3. Al-Harrasi A, Behl T, Upadhyay T, Chigurupati S, Bhatt S, Sehgal A, Bhatia S, Singh S, Sharma N, Vijayabalan S, Palanimuthu VR, Das S, Kaur R, Aleya L, Bungau S: Targeting natural products against SARS-CoV-2. Environ Sci Pollut Res Int. 2022 Jun;29(28):42404-42432. doi: 10.1007/s11356-022-19770-2. Epub 2022 Apr 1. [PubMed:35362883 ]
  4. Fernandes TA, Antunes AMM, Caldeira I, Anjos O, de Freitas V, Fargeton L, Boissier B, Catarino S, Canas S: Identification of gallotannins and ellagitannins in aged wine spirits: A new perspective using alternative ageing technology and high-resolution mass spectrometry. Food Chem. 2022 Jul 15;382:132322. doi: 10.1016/j.foodchem.2022.132322. Epub 2022 Feb 5. [PubMed:35158268 ]
  5. Gunther I, Rimbach G, Nevermann S, Neuhauser C, Stadlbauer V, Schwarzinger B, Schwarzinger C, Ipharraguerre IR, Weghuber J, Luersen K: Avens Root (Geum Urbanum L.) Extract Discovered by Target-Based Screening Exhibits Antidiabetic Activity in the Hen's Egg Test Model and Drosophila melanogaster. Front Pharmacol. 2021 Dec 15;12:794404. doi: 10.3389/fphar.2021.794404. eCollection 2021. [PubMed:34975489 ]
  6. LOTUS database [Link]