NP-MRD: Showing NP-Card for urs-12-ene-3β,28-diol (NP0235282)

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Record Information

Version

2.0

Created at

2022-09-06 17:49:11 UTC

Updated at

2022-09-06 17:49:11 UTC

NP-MRD ID

NP0235282

Secondary Accession Numbers

None

Natural Product Identification

Common Name

urs-12-ene-3β,28-diol

Description

(3R,4aR,6aR,6bS,8aS,11R,12S,12aS,14aR,14bR)-8a-(hydroxymethyl)-4,4,6a,6b,11,12,14b-heptamethyl-2,3,4a,5,6,7,8,9,10,11,12,12a,14,14a-tetradecahydro-1H-picen-3-ol belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. urs-12-ene-3β,28-diol is found in Alibertia edulis, Arctostaphylos columbiana, Baccharis coridifolia, Callistemon lanceolatus, Calluna vulgaris, Crataegus pinnatifida, Debregeasia salicifolia, Diospyros kaki, Diospyros melanoxylon, Diospyros montana, Diospyros sumatrana, Empetrum nigrum, Englerophytum magalismontanum, Eriobotrya japonica, Eucalyptus globulus, Eucalyptus saligna, Euphorbia micractina, Euphorbia retusa, Hippophae rhamnoides, Leptospermum scoparium, Licania pyrifolia, Maclura pomifera, Microtropis fokienensis, Nerium oleander, Nierembergia linariifolia, Olea europaea, Origanum dictamnus, Prunus serotina, Psidium guajava, Rhododendron ellipticum, Rhododendron ferrugineum, Rubus idaeus, Salvia tomentosa, Shorea robusta, Syzygium formosanum, Vochysia ferruginea and Woodwardia radicans. Based on a literature review very few articles have been published on (3R,4aR,6aR,6bS,8aS,11R,12S,12aS,14aR,14bR)-8a-(hydroxymethyl)-4,4,6a,6b,11,12,14b-heptamethyl-2,3,4a,5,6,7,8,9,10,11,12,12a,14,14a-tetradecahydro-1H-picen-3-ol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062219492D          

 32 36  0  0  1  0            999 V2000
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  2 31  1  0  0  0  0
 31 32  1  1  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309062219492D          

 32 36  0  0  1  0            999 V2000
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    0.7145   -5.9664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -5.9664    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -5.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -3.8230    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1105   -3.1086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 14 17  1  0  0  0  0
  8 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  7 20  1  0  0  0  0
 20 21  1  6  0  0  0
 20 22  1  0  0  0  0
  4 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
  3 26  1  0  0  0  0
 26 27  1  6  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
  2 31  1  0  0  0  0
 31 32  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0235282

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@]2(CO)CC[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@@H](O)C(C)(C)[C@@H]5CC[C@@]34C)[C@@H]2[C@H]1C

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O2/c1-19-10-15-30(18-31)17-16-28(6)21(25(30)20(19)2)8-9-23-27(5)13-12-24(32)26(3,4)22(27)11-14-29(23,28)7/h8,19-20,22-25,31-32H,9-18H2,1-7H3/t19-,20+,22+,23-,24-,25+,27+,28-,29-,30-/m1/s1

> <INCHI_KEY>
XUARCIYIVXVTAE-HGBZRQGGSA-N

> <FORMULA>
C30H50O2

> <MOLECULAR_WEIGHT>
442.728

> <EXACT_MASS>
442.38108085

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
54.76632410614944

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,4aR,6aR,6bS,8aS,11R,12S,12aS,14aR,14bR)-8a-(hydroxymethyl)-4,4,6a,6b,11,12,14b-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicen-3-ol

> <JCHEM_LOGP>
6.109341654000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.489433291560097

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.953297110466607

> <JCHEM_PKA_STRONGEST_BASIC>
-0.6357052290198816

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
133.7555

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
urs-12-ene-3β,28-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       2.874  -5.803   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.104  -7.136   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.874  -8.470   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.414  -8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.184  -7.136   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.724  -7.136   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.494  -8.470   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.034  -8.470   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.264  -7.136   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.804  -7.136   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.344  -7.136   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.114  -8.470   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      13.654  -8.470   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      11.344  -9.804   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.076 -11.320   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.791 -10.330   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.804  -9.804   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.034 -11.137   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.494 -11.137   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.724  -9.804   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.954 -11.137   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.184  -9.804   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.023 -11.335   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.414 -11.137   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.874 -11.137   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.104  -9.804   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.334 -11.137   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -0.206 -11.137   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       0.564  -9.804   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.206  -8.470   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.564  -7.136   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -0.206  -5.803   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   31                                                  
CONECT    3    2    4   26                                                  
CONECT    4    3    5   22                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9   10   17                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16   17                                             
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   14    8   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19    7   21   22                                             
CONECT   21   20                                                            
CONECT   22   20    4   23   24                                             
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25    3   27   29                                             
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30    2   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₀O₂

Average Mass

442.7280 Da

Monoisotopic Mass

442.38108 Da

IUPAC Name

(3R,4aR,6aR,6bS,8aS,11R,12S,12aS,14aR,14bR)-8a-(hydroxymethyl)-4,4,6a,6b,11,12,14b-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,14,14a,14b-icosahydropicen-3-ol

Traditional Name

urs-12-ene-3β,28-diol

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@]2(CO)CC[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@@H](O)C(C)(C)[C@@H]5CC[C@@]34C)[C@@H]2[C@H]1C

InChI Identifier

InChI=1S/C30H50O2/c1-19-10-15-30(18-31)17-16-28(6)21(25(30)20(19)2)8-9-23-27(5)13-12-24(32)26(3,4)22(27)11-14-29(23,28)7/h8,19-20,22-25,31-32H,9-18H2,1-7H3/t19-,20+,22+,23-,24-,25+,27+,28-,29-,30-/m1/s1

InChI Key

XUARCIYIVXVTAE-HGBZRQGGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Alibertia edulis	LOTUS Database	35616633
Arctostaphylos columbiana	LOTUS Database	35616633
Baccharis coridifolia	LOTUS Database	35616633
Callistemon lanceolatus	LOTUS Database	35616633
Calluna vulgaris	LOTUS Database	35616633
Crataegus pinnatifida	LOTUS Database	35616633
Debregeasia salicifolia	LOTUS Database	35616633
Diospyros kaki	LOTUS Database	35616633
Diospyros melanoxylon	LOTUS Database	35616633
Diospyros montana	LOTUS Database	35616633
Diospyros sumatrana	LOTUS Database	35616633
Empetrum nigrum	LOTUS Database	35616633
Englerophytum magalismontanum	LOTUS Database	35616633
Eriobotrya japonica	LOTUS Database	35616633
Eucalyptus globulus	LOTUS Database	35616633
Eucalyptus saligna	LOTUS Database	35616633
Euphorbia micractina	LOTUS Database	35616633
Euphorbia retusa	LOTUS Database	35616633
Hippophae rhamnoides	LOTUS Database	35616633
Leptospermum scoparium	LOTUS Database	35616633
Licania pyrifolia	LOTUS Database	35616633
Maclura pomifera	LOTUS Database	35616633
Microtropis fokienensis	LOTUS Database	35616633
Nerium oleander	LOTUS Database	35616633
Nierembergia linariifolia	LOTUS Database	35616633
Olea europaea	LOTUS Database	35616633
Origanum dictamnus	LOTUS Database	35616633
Prunus serotina	LOTUS Database	35616633
Psidium guajava	LOTUS Database	35616633
Rhododendron ellipticum	LOTUS Database	35616633
Rhododendron ferrugineum	LOTUS Database	35616633
Rubus idaeus	LOTUS Database	35616633
Salvia tomentosa	LOTUS Database	35616633
Shorea robusta	LOTUS Database	35616633
Syzygium formosanum	LOTUS Database	35616633
Vochysia ferruginea	LOTUS Database	35616633
Woodwardia radicans	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Cyclic alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.11	ChemAxon
pKa (Strongest Acidic)	18.95	ChemAxon
pKa (Strongest Basic)	-0.64	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	133.76 m³·mol⁻¹	ChemAxon
Polarizability	54.77 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

258842

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

293273

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for urs-12-ene-3β,28-diol (NP0235282)

MOL for NP0235282 (urs-12-ene-3β,28-diol)

3D MOL for NP0235282 (urs-12-ene-3β,28-diol)

3D SDF for NP0235282 (urs-12-ene-3β,28-diol)

3D-SDF for NP0235282 (urs-12-ene-3β,28-diol)

PDB for NP0235282 (urs-12-ene-3β,28-diol)

3D PDB for NP0235282 (urs-12-ene-3β,28-diol)

SMILES for NP0235282 (urs-12-ene-3β,28-diol)

INCHI for NP0235282 (urs-12-ene-3β,28-diol)

Structure for NP0235282 (urs-12-ene-3β,28-diol)

3D Structure for NP0235282 (urs-12-ene-3β,28-diol)