NP-MRD: Showing NP-Card for (3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol (NP0234332)

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Record Information

Version

2.0

Created at

2022-09-06 16:18:27 UTC

Updated at

2022-09-06 16:18:27 UTC

NP-MRD ID

NP0234332

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol

Description

MacroterrmycinB belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. Based on a literature review very few articles have been published on MacroterrmycinB.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062218182D          

 34 38  0  0  1  0            999 V2000
    9.1601    1.4532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3404    1.3594    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.8315    0.6965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5028   -0.0603    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6832   -0.1540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1922    0.5089    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3725    0.4151    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9666   -0.3031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1416   -0.3107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7226    0.4000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7736    0.6642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5115    1.4464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0578    2.0646    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7957    2.8468    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3421    3.4650    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1506    3.3008    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6970    3.9190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9812    5.3194    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.3642    5.6476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0799    4.2472    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2714    4.4113    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.8663    1.9005    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6874    2.7058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.2101    1.8348    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.1285    1.1182    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
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  4  5  1  0  0  0  0
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  7  8  1  1  0  0  0
  8  9  2  0  0  0  0
 10  9  1  1  0  0  0
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 13 14  1  1  0  0  0
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 22 23  1  1  0  0  0
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 24 25  1  6  0  0  0
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 29 31  2  0  0  0  0
 31 32  1  4  0  0  0
  2 32  1  0  0  0  0
 33 27  1  6  0  0  0
  7 33  1  0  0  0  0
 34 33  1  1  0  0  0
 10 34  1  0  0  0  0
 24 34  1  0  0  0  0
M  END

     RDKit          3D

 70 74  0  0  0  0  0  0  0  0999 V2000
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  1  2  1  0
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M  END


  Mrv1652309062218182D          

 34 38  0  0  1  0            999 V2000
    9.1601    1.4532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 24 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0234332

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CN=C(O)C[C@@H]2O[C@@]3(C)[C@H]4[C@H]2[C@H](C=C[C@H]4C=C[C@H]3O[C@H]2OC[C@H](O)[C@@H](O)[C@@H]2N)\C=C\C=C/1

> <INCHI_IDENTIFIER>
InChI=1S/C26H36N2O6/c1-14-5-3-4-6-15-7-8-16-9-10-19(33-25-23(27)24(31)17(29)13-32-25)26(2)22(16)21(15)18(34-26)11-20(30)28-12-14/h3-10,14-19,21-25,29,31H,11-13,27H2,1-2H3,(H,28,30)/b5-3-,6-4+/t14-,15-,16-,17-,18-,19+,21-,22+,23-,24+,25+,26+/m0/s1

> <INCHI_KEY>
PMOMCJMPRBACKS-LBACZXMASA-N

> <FORMULA>
C26H36N2O6

> <MOLECULAR_WEIGHT>
472.582

> <EXACT_MASS>
472.257336887

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
50.159628236468066

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4S,5S,6R)-5-amino-6-{[(1S,2R,5S,8S,9E,11Z,13S,18S,19R,20R)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0^{5,20}.0^{8,19}]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol

> <JCHEM_LOGP>
-1.1360323102165484

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.079943220621292

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.8741959576712235

> <JCHEM_PKA_STRONGEST_BASIC>
8.130825038764401

> <JCHEM_POLAR_SURFACE_AREA>
126.76000000000002

> <JCHEM_REFRACTIVITY>
130.3935

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,5S,6R)-5-amino-6-{[(1S,2R,5S,8S,9E,11Z,13S,18S,19R,20R)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0^{5,20}.0^{8,19}]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      17.099   2.713   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      15.569   2.538   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      16.485   1.300   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      15.872  -0.113   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.342  -0.288   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      13.425   0.950   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.895   0.775   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.138  -0.566   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.598  -0.580   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.815   0.747   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.044   1.240   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.555   2.700   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.575   3.854   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       7.085   5.314   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       8.105   6.468   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       9.614   6.162   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      10.634   7.315   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.145   8.776   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      11.165   9.929   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.636   9.082   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.146  10.542   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       7.616   7.928   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       6.107   8.234   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       9.084   3.548   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.750   5.051   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      10.321   4.464   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      11.592   3.425   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.122   3.600   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.736   5.013   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      12.819   6.250   0.000  0.00  0.00           O+0
HETATM   31  N   UNK     0      15.266   5.188   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0      16.182   3.950   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.979   2.012   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.573   2.087   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   32                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   33                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   34                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   24                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   15   23                                                  
CONECT   23   22                                                            
CONECT   24   13   25   26   34                                             
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   33                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31    2                                                       
CONECT   33   27    7   34                                                  
CONECT   34   33   10   24                                                  
MASTER        0    0    0    0    0    0    0    0   34    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₆N₂O₆

Average Mass

472.5820 Da

Monoisotopic Mass

472.25734 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@@H]1CN=C(O)C[C@@H]2O[C@@]3(C)[C@H]4[C@H]2[C@H](C=C[C@H]4C=C[C@H]3O[C@H]2OC[C@H](O)[C@@H](O)[C@@H]2N)\C=C\C=C/1

InChI Identifier

InChI=1S/C26H36N2O6/c1-14-5-3-4-6-15-7-8-16-9-10-19(33-25-23(27)24(31)17(29)13-32-25)26(2)22(16)21(15)18(34-26)11-20(30)28-12-14/h3-10,14-19,21-25,29,31H,11-13,27H2,1-2H3,(H,28,30)/b5-3-,6-4+/t14-,15-,16-,17-,18-,19+,21-,22+,23-,24+,25+,26+/m0/s1

InChI Key

PMOMCJMPRBACKS-LBACZXMASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

O-glycosyl compound
Pentose monosaccharide
Oxane
Monosaccharide
Cyclic carboximidic acid
Tetrahydrofuran
Secondary alcohol
1,2-diol
1,2-aminoalcohol
Oxacycle
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Ether
Dialkyl ether
Acetal
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Primary amine
Organonitrogen compound
Primary aliphatic amine
Amine
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78439308

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

132821223

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol (NP0234332)

MOL for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

3D MOL for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

3D SDF for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

3D-SDF for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

PDB for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

3D PDB for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

SMILES for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

INCHI for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

Structure for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)

3D Structure for NP0234332 ((3s,4s,5s,6r)-5-amino-6-{[(1s,2r,5s,8s,9e,11z,13s,18s,19r,20r)-16-hydroxy-1,13-dimethyl-21-oxa-15-azatetracyclo[16.2.1.0⁵,²⁰.0⁸,¹⁹]henicosa-3,6,9,11,15-pentaen-2-yl]oxy}oxane-3,4-diol)