NP-MRD: Showing NP-Card for (5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine (NP0234194)

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Record Information

Version

2.0

Created at

2022-09-06 16:05:19 UTC

Updated at

2022-09-06 16:05:19 UTC

NP-MRD ID

NP0234194

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine

Description

(5S,6R,8R,8aS)-5-butyl-6,8-diethyl-octahydroindolizine belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen. (5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine is found in Oophaga pumilio. Based on a literature review very few articles have been published on (5S,6R,8R,8aS)-5-butyl-6,8-diethyl-octahydroindolizine.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309062218052D          

 17 18  0  0  1  0            999 V2000
    1.8500    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7079    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4223    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2789   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 13 17  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0234194

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC[C@H]1[C@H](CC)C[C@@H](CC)[C@@H]2CCCN12

> <INCHI_IDENTIFIER>
InChI=1S/C16H31N/c1-4-7-9-15-13(5-2)12-14(6-3)16-10-8-11-17(15)16/h13-16H,4-12H2,1-3H3/t13-,14-,15+,16+/m1/s1

> <INCHI_KEY>
FGFYXTGPWYOCEB-WCVJEAGWSA-N

> <FORMULA>
C16H31N

> <MOLECULAR_WEIGHT>
237.431

> <EXACT_MASS>
237.245650002

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
31.166216440875296

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5S,6R,8R,8aS)-5-butyl-6,8-diethyl-octahydroindolizine

> <JCHEM_LOGP>
4.953417866333332

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
12.561603661723304

> <JCHEM_POLAR_SURFACE_AREA>
3.24

> <JCHEM_REFRACTIVITY>
75.63129999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5S,6R,8R,8aS)-5-butyl-6,8-diethyl-octahydroindolizine

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       3.453   6.930   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.787   6.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.787   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.121   3.850   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.454   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.788   2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.122   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.121  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.121  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.454  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.787   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.322  -0.476   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.417   0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.322   2.016   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       4.787   1.540   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13   10   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16    5   13                                                  
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₃₁N

Average Mass

237.4310 Da

Monoisotopic Mass

237.24565 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CCCC[C@H]1[C@H](CC)C[C@@H](CC)[C@@H]2CCCN12

InChI Identifier

InChI=1S/C16H31N/c1-4-7-9-15-13(5-2)12-14(6-3)16-10-8-11-17(15)16/h13-16H,4-12H2,1-3H3/t13-,14-,15+,16+/m1/s1

InChI Key

FGFYXTGPWYOCEB-WCVJEAGWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dendrobates pumilio	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indolizidines

Sub Class

Not Available

Direct Parent

Indolizidines

Alternative Parents

Substituents

Indolizidine
N-alkylpyrrolidine
Piperidine
Pyrrolidine
Tertiary aliphatic amine
Tertiary amine
Azacycle
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162913556

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine (NP0234194)

MOL for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

3D MOL for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

3D SDF for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

3D-SDF for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

PDB for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

3D PDB for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

SMILES for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

INCHI for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

Structure for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)

3D Structure for NP0234194 ((5s,6r,8r,8as)-5-butyl-6,8-diethyl-octahydroindolizine)