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Record Information
Version2.0
Created at2022-09-06 15:12:06 UTC
Updated at2022-09-06 15:12:06 UTC
NP-MRD IDNP0233553
Secondary Accession NumbersNone
Natural Product Identification
Common Namepelargonidin 3,5-diglucoside
DescriptionPelargonin belongs to the class of organic compounds known as anthocyanidin-5-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C5-position. It is the 3,5-O-diglucoside of pelargonidin. Pelargonin is an extremely weak basic (essentially neutral) compound (based on its pKa). Pelargonin is an anthocyanin. pelargonidin 3,5-diglucoside is found in Lathyrus odoratus, Pelargonium dolomiticum and Saraca indica. pelargonidin 3,5-diglucoside was first documented in 2000 (PMID: 10637045). Pelargonin is a pigment, found in barberries, the petals of the scarlet pelargonium flower pomegranates, and red wine (PMID: 16395794) (PMID: 21936496) (PMID: 23132311) (PMID: 23216001).
Structure
Thumb
Synonyms
Chemical FormulaC27H31O15
Average Mass595.5290 Da
Monoisotopic Mass595.16575 Da
IUPAC Name7-hydroxy-2-(4-hydroxyphenyl)-3,5-bis({[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-1lambda4-chromen-1-ylium
Traditional Name7-hydroxy-2-(4-hydroxyphenyl)-3,5-bis({[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-1lambda4-chromen-1-ylium
CAS Registry NumberNot Available
SMILES
OC[C@H]1O[C@@H](OC2=CC3=C(O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)C=C(O)C=C3[O+]=C2C2=CC=C(O)C=C2)[C@H](O)[C@@H](O)[C@@H]1O
InChI Identifier
InChI=1S/C27H30O15/c28-8-17-19(32)21(34)23(36)26(41-17)39-15-6-12(31)5-14-13(15)7-16(25(38-14)10-1-3-11(30)4-2-10)40-27-24(37)22(35)20(33)18(9-29)42-27/h1-7,17-24,26-29,32-37H,8-9H2,(H-,30,31)/p+1/t17-,18-,19-,20-,21+,22+,23-,24-,26-,27-/m1/s1
InChI KeySLCKJKWFULXZBD-ZOTFFYTFSA-O
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Lathyrus odoratusLOTUS Database
Pelargonium dolomiticumLOTUS Database
Saraca indicaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as anthocyanidin-5-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C5-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentAnthocyanidin-5-O-glycosides
Alternative Parents
Substituents
  • Anthocyanidin-3-o-glycoside
  • Anthocyanidin-5-o-glycoside
  • Flavonoid-3-o-glycoside
  • 4'-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • Hydroxyflavonoid
  • Anthocyanidin
  • Phenolic glycoside
  • Hexose monosaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • 1-benzopyran
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Monosaccharide
  • Oxane
  • Heteroaromatic compound
  • Secondary alcohol
  • Organoheterocyclic compound
  • Oxacycle
  • Acetal
  • Polyol
  • Primary alcohol
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organooxygen compound
  • Alcohol
  • Organic cation
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.03ALOGPS
logP-2ChemAxon
logS-2.7ALOGPS
pKa (Strongest Acidic)6.66ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area252.36 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity146.42 m³·mol⁻¹ChemAxon
Polarizability57.28 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDHMDB0033681
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB006804
KNApSAcK IDC00002387
Chemspider ID390369
KEGG Compound IDC08725
BioCyc IDCPD-7137
BiGG IDNot Available
Wikipedia LinkPelargonin
METLIN IDNot Available
PubChem Compound441772
PDB IDNot Available
ChEBI ID133365
Good Scents IDNot Available
References
General References
  1. Gonnet JF, Fenet B: "Cyclamen Red" colors based on a macrocyclic anthocyanin in carnation flowers. J Agric Food Chem. 2000 Jan;48(1):22-6. doi: 10.1021/jf9907642. [PubMed:10637045 ]
  2. Tian Q, Giusti MM, Stoner GD, Schwartz SJ: Screening for anthocyanins using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry with precursor-ion analysis, product-ion analysis, common-neutral-loss analysis, and selected reaction monitoring. J Chromatogr A. 2005 Oct 14;1091(1-2):72-82. doi: 10.1016/j.chroma.2005.07.036. [PubMed:16395794 ]
  3. Karasawa K, Uzuhashi Y, Hirota M, Otani H: A matured fruit extract of date palm tree (Phoenix dactylifera L.) stimulates the cellular immune system in mice. J Agric Food Chem. 2011 Oct 26;59(20):11287-93. doi: 10.1021/jf2029225. Epub 2011 Oct 3. [PubMed:21936496 ]
  4. Karasawa K, Otani H: Anti-allergic properties of a matured fruit extract of the date palm tree (Phoenix dactylifera L.) in mite-sensitized mice. J Nutr Sci Vitaminol (Tokyo). 2012;58(4):272-7. doi: 10.3177/jnsv.58.272. [PubMed:23132311 ]
  5. Deng GF, Xu XR, Zhang Y, Li D, Gan RY, Li HB: Phenolic compounds and bioactivities of pigmented rice. Crit Rev Food Sci Nutr. 2013;53(3):296-306. doi: 10.1080/10408398.2010.529624. [PubMed:23216001 ]
  6. LOTUS database [Link]