NP-MRD: Showing NP-Card for 3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone (NP0232636)

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Record Information

Version

2.0

Created at

2022-09-06 13:56:12 UTC

Updated at

2022-09-06 13:56:12 UTC

NP-MRD ID

NP0232636

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone

Description

3-Benzyl-1,10-dihydroxy-5,8-dimethyl-9,16-bis(2-methylpropyl)-6-(propan-2-yl)-3H,4H,5H,6H,7H,8H,9H,12H,13H,14H,16H,17H,19H,20H,21H,21aH-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. 3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone is found in Nigrosabulum globosum. 3-Benzyl-1,10-dihydroxy-5,8-dimethyl-9,16-bis(2-methylpropyl)-6-(propan-2-yl)-3H,4H,5H,6H,7H,8H,9H,12H,13H,14H,16H,17H,19H,20H,21H,21aH-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161513432D          

 48 50  0  0  0  0            999 V2000
    5.7421    1.2659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3067    0.6644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1100    0.8525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0681   -0.1254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6327   -0.7269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4359   -0.5387    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6746    0.2510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5714    1.0695    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4778    0.4392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1236   -0.1916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9457   -0.2609    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.1339   -1.0641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8944   -1.3840    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4281   -1.4913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0687   -2.0112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8392   -1.7163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4232   -1.1335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.0878   -3.3213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6524   -3.9228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.4137   -4.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.0040   -5.2771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9621   -6.2550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5273   -2.5116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3940   -1.5166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
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 14 19  1  0  0  0  0
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 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 33 38  1  0  0  0  0
 31 39  1  0  0  0  0
 39 40  1  0  0  0  0
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 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
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 42 46  1  0  0  0  0
 46 47  1  0  0  0  0
  5 47  1  0  0  0  0
 47 48  2  0  0  0  0
M  END

     RDKit          3D

103105  0  0  0  0  0  0  0  0999 V2000
    5.3080   -3.7258    2.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6566   -3.0214    0.8965 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5982   -2.2049    0.1087 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4017   -2.3876    1.3802 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5549   -1.3658    2.4739 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3464   -0.8458    2.9430 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7262   -1.5450    4.4360 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2166   -0.7034    0.7084 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7133   -0.7614    0.9056 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.9161    1.3900    1.4162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1193    1.2623   -0.7234 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0464    1.7708   -1.8078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8621    0.8015   -2.5495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9924    2.8040   -1.1677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7770    1.0061   -1.1421 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5750    0.6814   -2.5412 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2242    2.1181    0.6277 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.8294    4.7816   -1.7230 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6166    1.1936   -1.1895 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.6034    2.2217    0.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
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  7  8  2  0
  7  9  1  0
  9 10  1  0
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 16 18  1  0
 14 19  1  0
 19 20  1  0
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 29 30  2  0
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 31 32  1  0
 32 33  1  0
 33 34  2  0
 34 35  1  0
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 31 39  1  0
 39 40  1  0
 40 41  2  0
 40 42  1  0
 42 43  1  0
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 44 45  1  0
 45 46  1  0
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 47 48  2  0
 47  5  1  0
 38 33  1  0
 46 42  1  0
  1 49  1  0
  1 50  1  0
  1 51  1  0
  2 52  1  0
  3 53  1  0
  3 54  1  0
  3 55  1  0
  4 56  1  0
  4 57  1  0
  5 58  1  1
  9 59  1  0
  9 60  1  0
 10 61  1  0
 10 62  1  0
 11 63  1  0
 14 64  1  1
 15 65  1  0
 15 66  1  0
 16 67  1  0
 17 68  1  0
 17 69  1  0
 17 70  1  0
 18 71  1  0
 18 72  1  0
 18 73  1  0
 20 74  1  0
 20 75  1  0
 20 76  1  0
 23 77  1  1
 24 78  1  0
 25 79  1  0
 25 80  1  0
 25 81  1  0
 26 82  1  0
 26 83  1  0
 26 84  1  0
 28 85  1  0
 28 86  1  0
 28 87  1  0
 31 88  1  1
 32 89  1  0
 32 90  1  0
 34 91  1  0
 35 92  1  0
 36 93  1  0
 37 94  1  0
 38 95  1  0
 39 96  1  0
 42 97  1  6
 43 98  1  0
 43 99  1  0
 44100  1  0
 44101  1  0
 45102  1  0
 45103  1  0
M  END


  Mrv1533004161513432D          

 48 50  0  0  0  0            999 V2000
    5.7421    1.2659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3067    0.6644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1100    0.8525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0681   -0.1254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6327   -0.7269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4359   -0.5387    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6746    0.2510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5714    1.0695    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4778    0.4392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1236   -0.1916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9457   -0.2609    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.1339   -1.0641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8944   -1.3840    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4281   -1.4913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0687   -2.0112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8392   -1.7163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4232   -1.1335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4799   -2.2361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1297   -2.3434    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.6811   -2.9570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3264   -2.5315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7618   -1.9300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0878   -3.3213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6524   -3.9228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4556   -3.7346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4137   -4.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2845   -3.5094    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.7199   -2.9079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0459   -4.2992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6105   -4.9007    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2426   -4.4874    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0040   -5.2771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2007   -5.4653    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9621   -6.2550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1588   -6.4432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5942   -5.8416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8329   -5.0519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6361   -4.8637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6780   -3.8858    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.9167   -3.0961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4559   -2.4717    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3521   -2.4945    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5273   -2.5116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2562   -1.7324    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9134   -1.2338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5907   -1.7048    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3940   -1.5166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9586   -2.1182    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 23 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 33 38  1  0  0  0  0
 31 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 40 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 42 46  1  0  0  0  0
 46 47  1  0  0  0  0
  5 47  1  0  0  0  0
 47 48  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0232636

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CC1OC(=O)CCNC(=O)C(CC(C)C)N(C)C(=O)C(C(C)C)N(C)C(=O)C(CC2=CC=CC=C2)NC(=O)C2CCCN2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C36H55N5O7/c1-22(2)19-28-32(43)37-17-16-30(42)48-29(20-23(3)4)35(46)41-18-12-15-27(41)33(44)38-26(21-25-13-10-9-11-14-25)34(45)40(8)31(24(5)6)36(47)39(28)7/h9-11,13-14,22-24,26-29,31H,12,15-21H2,1-8H3,(H,37,43)(H,38,44)

> <INCHI_KEY>
CNPDLOWQKDIMOD-UHFFFAOYSA-N

> <FORMULA>
C36H55N5O7

> <MOLECULAR_WEIGHT>
669.864

> <EXACT_MASS>
669.410149131

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
103

> <JCHEM_AVERAGE_POLARIZABILITY>
72.88230897921645

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-benzyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-6-(propan-2-yl)-icosahydropyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-1,4,7,10,14,17-hexone

> <ALOGPS_LOGP>
3.14

> <JCHEM_LOGP>
2.950354724666666

> <ALOGPS_LOGS>
-4.23

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.38036986815018

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.4154387099913

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6909248262436036

> <JCHEM_POLAR_SURFACE_AREA>
145.43

> <JCHEM_REFRACTIVITY>
180.4844

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.92e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-benzyl-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-dodecahydropyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-1,4,7,10,14,17-hexone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      10.719   2.363   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.773   1.240   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      13.272   1.591   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.327  -0.234   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.381  -1.357   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      13.880  -1.006   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      14.326   0.469   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      14.133   1.996   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      15.825   0.820   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      17.031  -0.358   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0      18.565  -0.487   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0      18.917  -1.986   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      20.336  -2.584   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      17.599  -2.784   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      18.795  -3.754   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      20.233  -3.204   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      21.323  -2.116   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      21.429  -4.174   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0      17.042  -4.374   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0      18.071  -5.520   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.543  -4.726   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      14.489  -3.603   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      15.097  -6.200   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      16.151  -7.323   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      17.651  -6.971   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.706  -8.797   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0      13.598  -6.551   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0      12.544  -5.428   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.152  -8.025   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      14.206  -9.148   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      11.653  -8.376   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      11.207  -9.851   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.708 -10.202   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.263 -11.676   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.763 -12.027   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       6.709 -10.904   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       7.155  -9.430   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       8.654  -9.079   0.000  0.00  0.00           C+0
HETATM   39  N   UNK     0      10.599  -7.254   0.000  0.00  0.00           N+0
HETATM   40  C   UNK     0      11.044  -5.779   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      12.051  -4.614   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0       9.991  -4.656   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       8.451  -4.688   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       7.945  -3.234   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       9.172  -2.303   0.000  0.00  0.00           C+0
HETATM   46  N   UNK     0      10.436  -3.182   0.000  0.00  0.00           N+0
HETATM   47  C   UNK     0      11.935  -2.831   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      12.989  -3.954   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   47                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   14   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   27                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27   23   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   39                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   38                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   33                                                       
CONECT   39   31   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43   46                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   42   47                                                  
CONECT   47   46    5   48                                                  
CONECT   48   47                                                            
MASTER        0    0    0    0    0    0    0    0   48    0  100    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₅₅N₅O₇

Average Mass

669.8640 Da

Monoisotopic Mass

669.41015 Da

IUPAC Name

3-benzyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-6-(propan-2-yl)-icosahydropyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-1,4,7,10,14,17-hexone

Traditional Name

3-benzyl-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-dodecahydropyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-1,4,7,10,14,17-hexone

CAS Registry Number

Not Available

SMILES

CC(C)CC1OC(=O)CCNC(=O)C(CC(C)C)N(C)C(=O)C(C(C)C)N(C)C(=O)C(CC2=CC=CC=C2)NC(=O)C2CCCN2C1=O

InChI Identifier

InChI=1S/C36H55N5O7/c1-22(2)19-28-32(43)37-17-16-30(42)48-29(20-23(3)4)35(46)41-18-12-15-27(41)33(44)38-26(21-25-13-10-9-11-14-25)34(45)40(8)31(24(5)6)36(47)39(28)7/h9-11,13-14,22-24,26-29,31H,12,15-21H2,1-8H3,(H,37,43)(H,38,44)

InChI Key

CNPDLOWQKDIMOD-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nigrosabulum globosum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Cyclic depsipeptides

Alternative Parents

Substituents

Cyclic depsipeptide
Macrolide lactam
Macrolactam
Macrolide
Alpha-amino acid or derivatives
Monocyclic benzene moiety
Benzenoid
Cyclic carboximidic acid
Tertiary carboxylic acid amide
Pyrrolidine
Carboxamide group
Carboxylic acid ester
Lactam
Lactone
Carboxylic acid derivative
Oxacycle
Azacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organopnictogen compound
Organic nitrogen compound
Organic oxide
Organonitrogen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.14	ALOGPS
logP	2.95	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	12.42	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	145.43 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	180.48 m³·mol⁻¹	ChemAxon
Polarizability	72.88 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

85084012

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone (NP0232636)

MOL for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

3D MOL for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

3D SDF for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

3D-SDF for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

PDB for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

3D PDB for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

SMILES for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

INCHI for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

Structure for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)

3D Structure for NP0232636 (3-benzyl-1,10-dihydroxy-6-isopropyl-5,8-dimethyl-9,16-bis(2-methylpropyl)-3h,6h,9h,12h,13h,16h,19h,20h,21h,21ah-pyrrolo[1,2-d]1-oxa-4,7,10,13,16-pentaazacyclononadecane-4,7,14,17-tetrone)