NP-MRD: Showing NP-Card for 5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol (NP0232601)

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Record Information

Version

2.0

Created at

2022-09-06 13:53:21 UTC

Updated at

2022-09-06 13:53:22 UTC

NP-MRD ID

NP0232601

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol

Description

(7S)-(+)-7-O-METHYLSYDONOL belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. 5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol was first documented in 2013 (PMID: 23647825). Based on a literature review very few articles have been published on (7S)-(+)-7-O-METHYLSYDONOL.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 45  0  0  0  0  0  0  0  0999 V2000
   -0.5866   -3.0943    2.0334 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2445   -2.0463    1.7780 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5570   -1.8363    0.4379 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2288   -3.0716   -0.1115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6993   -1.4815   -0.2710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480   -0.2160    0.2978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6031    0.0110   -0.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3601    1.2343   -0.0747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5896    1.3324   -0.9826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5353    2.4737   -0.3486 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5218   -0.7161    0.2916 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9902    0.0007    1.3741 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8747    1.0363    1.1870 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3112    1.3804   -0.0772 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2695    2.5073   -0.2487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6344    3.7201   -0.4263 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8573    0.6805   -1.1617 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9622   -0.3663   -0.9617 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5573   -1.0202   -2.1161 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7461   -3.1628    3.1538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6456   -2.9613    1.6597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2577   -4.0736    1.6856 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5462   -3.6675   -0.7560 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1109   -2.8332   -0.7443 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6426   -3.7080    0.7243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5779   -1.2634   -1.3473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3990   -2.3379   -0.2210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6994    0.6667    0.1215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5301   -0.2861    1.3688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2536   -0.8833   -0.4331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3157    0.1289   -1.5756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6762    1.1978    0.9656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3013    1.2161   -2.0473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3196    0.5229   -0.7385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1121    2.2831   -0.8686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4029    2.5761   -1.4542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5973    2.5098    0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1768    3.3496   -0.0592 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6261   -0.2984    2.3438 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2471    1.6033    2.0270 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9137    2.2961   -1.1307 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9617    2.5087    0.6278 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6165    3.9248   -1.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2047    0.9577   -2.1446 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8548   -0.7941   -3.0335 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  3  2  1  1
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
  3 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  2  0
 18 19  1  0
 18 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  4 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  0
  6 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  9 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  0
 10 37  1  0
 10 38  1  0
 12 39  1  0
 13 40  1  0
 15 41  1  0
 15 42  1  0
 16 43  1  0
 17 44  1  0
 19 45  1  0
M  END


  Mrv1652309062215532D          

 19 19  0  0  1  0            999 V2000
    1.9520    1.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1105    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
  3 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
 11 18  1  0  0  0  0
 18 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0232601

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@](C)(CCCC(C)C)C1=CC=C(CO)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C16H26O3/c1-12(2)6-5-9-16(3,19-4)14-8-7-13(11-17)10-15(14)18/h7-8,10,12,17-18H,5-6,9,11H2,1-4H3/t16-/m0/s1

> <INCHI_KEY>
PWOXLPFACURSPD-INIZCTEOSA-N

> <FORMULA>
C16H26O3

> <MOLECULAR_WEIGHT>
266.381

> <EXACT_MASS>
266.188194697

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
31.161466852175526

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-(hydroxymethyl)-2-[(2S)-2-methoxy-6-methylheptan-2-yl]phenol

> <JCHEM_LOGP>
3.618506642666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.160122113835058

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.90147879238392

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8301287035238714

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
78.3545

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-(hydroxymethyl)-2-[(2S)-2-methoxy-6-methylheptan-2-yl]phenol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       3.644   2.516   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.874   3.850   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.206   3.850   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.334   8.470   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.334  10.010   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.667   7.700   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   11                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    3   12   18                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17   11   19                                                  
CONECT   19   18                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₆O₃

Average Mass

266.3810 Da

Monoisotopic Mass

266.18819 Da

IUPAC Name

5-(hydroxymethyl)-2-[(2S)-2-methoxy-6-methylheptan-2-yl]phenol

Traditional Name

5-(hydroxymethyl)-2-[(2S)-2-methoxy-6-methylheptan-2-yl]phenol

CAS Registry Number

Not Available

SMILES

CO[C@@](C)(CCCC(C)C)C1=CC=C(CO)C=C1O

InChI Identifier

InChI=1S/C16H26O3/c1-12(2)6-5-9-16(3,19-4)14-8-7-13(11-17)10-15(14)18/h7-8,10,12,17-18H,5-6,9,11H2,1-4H3/t16-/m0/s1

InChI Key

PWOXLPFACURSPD-INIZCTEOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Bisabolane sesquiterpenoid
Benzylether
Benzyl alcohol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Benzenoid
Ether
Dialkyl ether
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Primary alcohol
Aromatic alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.62	ChemAxon
pKa (Strongest Acidic)	8.9	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.69 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	78.35 m³·mol⁻¹	ChemAxon
Polarizability	31.16 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

30814226

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71713905

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Chung YM, Wei CK, Chuang DW, El-Shazly M, Hsieh CT, Asai T, Oshima Y, Hsieh TJ, Hwang TL, Wu YC, Chang FR: An epigenetic modifier enhances the production of anti-diabetic and anti-inflammatory sesquiterpenoids from Aspergillus sydowii. Bioorg Med Chem. 2013 Jul 1;21(13):3866-72. doi: 10.1016/j.bmc.2013.04.004. Epub 2013 Apr 13. [PubMed:23647825 ]
LOTUS database [Link]

Showing NP-Card for 5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol (NP0232601)

MOL for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

3D MOL for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

3D SDF for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

3D-SDF for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

PDB for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

3D PDB for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

SMILES for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

INCHI for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

Structure for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)

3D Structure for NP0232601 (5-(hydroxymethyl)-2-[(2s)-2-methoxy-6-methylheptan-2-yl]phenol)