NP-MRD: Showing NP-Card for (2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine (NP0231148)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-06 11:52:20 UTC

Updated at

2022-09-06 11:52:21 UTC

NP-MRD ID

NP0231148

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine

Description

(2S,4S,5R)-5-ethenyl-13-methoxy-4-{[(1R)-6-methoxy-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]methyl}-7,17-diazatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]Heptadeca-1(10),11(16),12,14-tetraene belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. (2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine is found in Cinchona calisaya. Based on a literature review very few articles have been published on (2S,4S,5R)-5-ethenyl-13-methoxy-4-{[(1R)-6-methoxy-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]methyl}-7,17-diazatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]Heptadeca-1(10),11(16),12,14-tetraene.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062213522D          

 37 43  0  0  1  0            999 V2000
    2.5089   -9.6730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3159   -9.8445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8679   -9.2314    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6749   -9.4030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2269   -8.7899    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0339   -8.9614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5859   -8.3483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3310   -7.5637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5240   -7.3922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4378   -6.5717    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1914   -6.2361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4464   -5.4515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2533   -5.2800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8054   -5.8931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6123   -5.7215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8673   -4.9369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5504   -6.6777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7435   -6.8492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9720   -8.0053    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1650   -7.8337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6130   -8.4468    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8060   -8.2753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5510   -7.4907    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1031   -6.8776    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8481   -6.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0412   -5.9214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4891   -6.5345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7441   -7.3191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0766   -7.8041    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4092   -7.3191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3978   -7.4907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9498   -6.8776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6949   -6.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2469   -5.4799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0539   -5.6514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1121   -5.9214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6641   -6.5345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
  8 18  1  0  0  0  0
 11 18  1  0  0  0  0
 19  9  1  1  0  0  0
  5 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  3 21  1  0  0  0  0
 21 22  1  1  0  0  0
 23 22  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 33 36  1  0  0  0  0
 36 37  2  0  0  0  0
 27 37  1  0  0  0  0
 30 37  1  0  0  0  0
M  END

     RDKit          3D

 73 79  0  0  0  0  0  0  0  0999 V2000
   -0.7494   -4.2379    1.6102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0630   -3.7455    0.5970 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3884   -2.3422    0.6381 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8938   -2.3494    0.4269 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2300   -2.1671   -0.9726 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5628   -2.6181   -1.1892 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4027   -1.6714   -2.0294 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3472   -0.3537   -1.2988 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0738    0.0678   -0.9682 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2129    1.2378   -0.3330 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.5363    1.5642   -0.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2055    2.6374    0.2862 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5811    2.6637    0.1948 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3155    1.6546   -0.4188 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7128    1.7461   -0.4760 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3549    2.8580    0.0882 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6443    0.5810   -0.9597 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2786    0.5543   -0.8692 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9604   -0.8269   -1.3778 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6435   -0.3549   -0.7388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2002   -1.5481   -0.5357 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6549   -1.3189   -0.3389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0504   -0.4916    0.8195 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5026    0.7928    0.9307 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9731    1.8379    0.1147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2600    1.5864   -0.6194 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1385    0.6326    0.1155 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5415   -0.3936    0.8274 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5536   -1.0743    1.3732 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7471   -0.5246    1.0375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0586   -0.8365    1.3318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1123   -0.0877    0.8446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8912    1.0089    0.0390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9527    1.7711   -0.4575 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6296    2.8876   -1.2827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5750    1.3145   -0.2510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5120    0.5720    0.2311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9727   -3.6062    2.4584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0893   -5.2911    1.5815 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1631   -4.3793   -0.2582 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1981   -1.8688    1.6022 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3804   -1.5377    0.9902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3357   -3.3282    0.7290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5945   -3.6005   -1.6584 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1182   -2.7147   -0.2106 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4528   -2.0245   -1.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0492   -1.5701   -3.0572 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4194    1.8009    0.0389 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6451    3.4281    0.7657 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1235    3.5146    0.6227 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0868    3.8117   -0.4351 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0289    2.9865    1.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4402    2.7622    0.1024 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1655   -0.2280   -1.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8409   -0.8327   -2.5003 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9395    0.1772    0.1823 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2493    0.3882   -1.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0810   -2.2213   -1.4168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1250   -2.3338   -0.1979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1074   -0.9268   -1.2728 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7934   -1.0709    1.7475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3377    1.0391    1.9287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0621    2.7631    0.7592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2039    2.1061   -0.6389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7564    2.5953   -0.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0715    1.2544   -1.6642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4415   -1.9190    1.9790 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2855   -1.6936    1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1500   -0.3285    1.0731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1817    2.5833   -2.2444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8747    3.5331   -0.7581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5110    3.5399   -1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3653    2.1662   -0.8786 H   0  0  0  0  0  0  0  0  0  0  0  0
 35 34  1  0
 34 33  1  0
 33 32  2  0
 32 31  1  0
 31 30  2  0
 30 29  1  0
 29 28  1  0
 28 27  2  0
 27 26  1  0
 26 25  1  0
 25 24  1  0
 24 23  1  0
 23 22  1  0
 22 21  1  0
 21 20  1  0
 20 19  1  0
 19  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  2  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
 27 37  1  0
 37 36  2  0
 36 33  1  0
 37 30  1  0
 23 28  1  0
  3 21  1  0
  9 19  1  0
 18 11  1  0
 18  8  1  0
 35 70  1  0
 35 71  1  0
 35 72  1  0
 32 69  1  0
 31 68  1  0
 29 67  1  0
 26 65  1  0
 26 66  1  0
 25 63  1  0
 25 64  1  0
 24 62  1  0
 23 61  1  1
 22 59  1  0
 22 60  1  0
 21 58  1  6
 20 56  1  0
 20 57  1  0
 19 55  1  6
  6 44  1  0
  6 45  1  0
  7 46  1  0
  7 47  1  0
 10 48  1  0
 12 49  1  0
 13 50  1  0
 16 51  1  0
 16 52  1  0
 16 53  1  0
 17 54  1  0
  4 42  1  0
  4 43  1  0
  3 41  1  1
  2 40  1  0
  1 38  1  0
  1 39  1  0
 36 73  1  0
M  END


  Mrv1652309062213522D          

 37 43  0  0  1  0            999 V2000
    2.5089   -9.6730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3159   -9.8445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8679   -9.2314    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6749   -9.4030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2269   -8.7899    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0339   -8.9614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5859   -8.3483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3310   -7.5637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5240   -7.3922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4378   -6.5717    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1914   -6.2361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4464   -5.4515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2533   -5.2800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8054   -5.8931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6123   -5.7215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8673   -4.9369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5504   -6.6777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7435   -6.8492    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9720   -8.0053    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1650   -7.8337    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6130   -8.4468    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8060   -8.2753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5510   -7.4907    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1031   -6.8776    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8481   -6.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0412   -5.9214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4891   -6.5345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7441   -7.3191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0766   -7.8041    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4092   -7.3191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3978   -7.4907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9498   -6.8776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6949   -6.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2469   -5.4799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0539   -5.6514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1121   -5.9214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6641   -6.5345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
  8 18  1  0  0  0  0
 11 18  1  0  0  0  0
 19  9  1  1  0  0  0
  5 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  3 21  1  0  0  0  0
 21 22  1  1  0  0  0
 23 22  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 33 36  1  0  0  0  0
 36 37  2  0  0  0  0
 27 37  1  0  0  0  0
 30 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0231148

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C2NC3=C(CCN[C@@H]3C[C@H]3C[C@@H]4N(CCC5=C4NC4=CC=C(OC)C=C54)C[C@@H]3C=C)C2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C31H36N4O2/c1-4-18-17-35-12-10-23-25-16-21(37-3)6-8-27(25)34-31(23)29(35)14-19(18)13-28-30-22(9-11-32-28)24-15-20(36-2)5-7-26(24)33-30/h4-8,15-16,18-19,28-29,32-34H,1,9-14,17H2,2-3H3/t18-,19-,28+,29-/m0/s1

> <INCHI_KEY>
MKRBLBZRPCFROB-NLARUVOZSA-N

> <FORMULA>
C31H36N4O2

> <MOLECULAR_WEIGHT>
496.655

> <EXACT_MASS>
496.283826415

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
59.1509142371146

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,12bS)-3-ethenyl-9-methoxy-2-{[(1R)-6-methoxy-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]methyl}-1H,2H,3H,4H,6H,7H,12H,12bH-indolo[2,3-a]quinolizine

> <JCHEM_LOGP>
4.537137933333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA>
16.955537443360015

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.353443054636145

> <JCHEM_PKA_STRONGEST_BASIC>
9.340388561965646

> <JCHEM_POLAR_SURFACE_AREA>
65.31

> <JCHEM_REFRACTIVITY>
148.79639999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,12bS)-3-ethenyl-9-methoxy-2-{[(1R)-6-methoxy-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]methyl}-1H,2H,3H,4H,6H,7H,12H,12bH-indolo[2,3-a]quinolizine

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       4.683 -18.056   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.190 -18.376   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.220 -17.232   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.726 -17.552   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       9.757 -16.408   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0      11.263 -16.728   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.294 -15.584   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.818 -14.119   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.311 -13.799   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      10.150 -12.267   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      11.557 -11.641   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.033 -10.176   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.540  -9.856   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.570 -11.000   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      16.076 -10.680   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      16.552  -9.216   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.094 -12.465   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.588 -12.785   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.281 -14.943   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.775 -14.623   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.744 -15.767   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.238 -15.447   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.762 -13.983   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       5.792 -12.838   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       5.317 -11.374   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.810 -11.053   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.780 -12.198   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.256 -13.662   0.000  0.00  0.00           C+0
HETATM   29  N   UNK     0       2.010 -14.568   0.000  0.00  0.00           N+0
HETATM   30  C   UNK     0       0.764 -13.662   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -0.743 -13.983   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -1.773 -12.838   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -1.297 -11.374   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -2.328 -10.229   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -3.834 -10.549   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       0.209 -11.053   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       1.240 -12.198   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   21                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   19                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   18                                                  
CONECT    9    8   10   19                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17    8   11                                                  
CONECT   19    9    5   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20    3   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   37                                                  
CONECT   28   27   23   29                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   37                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34   36                                                  
CONECT   34   33   35                                                       
CONECT   35   34                                                            
CONECT   36   33   37                                                       
CONECT   37   36   27   30                                                  
MASTER        0    0    0    0    0    0    0    0   37    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₁H₃₆N₄O₂

Average Mass

496.6550 Da

Monoisotopic Mass

496.28383 Da

IUPAC Name

(2S,3R,12bS)-3-ethenyl-9-methoxy-2-{[(1R)-6-methoxy-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]methyl}-1H,2H,3H,4H,6H,7H,12H,12bH-indolo[2,3-a]quinolizine

Traditional Name

(2S,3R,12bS)-3-ethenyl-9-methoxy-2-{[(1R)-6-methoxy-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-1-yl]methyl}-1H,2H,3H,4H,6H,7H,12H,12bH-indolo[2,3-a]quinolizine

CAS Registry Number

Not Available

SMILES

COC1=CC=C2NC3=C(CCN[C@@H]3C[C@H]3C[C@@H]4N(CCC5=C4NC4=CC=C(OC)C=C54)C[C@@H]3C=C)C2=C1

InChI Identifier

InChI=1S/C31H36N4O2/c1-4-18-17-35-12-10-23-25-16-21(37-3)6-8-27(25)34-31(23)29(35)14-19(18)13-28-30-22(9-11-32-28)24-15-20(36-2)5-7-26(24)33-30/h4-8,15-16,18-19,28-29,32-34H,1,9-14,17H2,2-3H3/t18-,19-,28+,29-/m0/s1

InChI Key

MKRBLBZRPCFROB-NLARUVOZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cinchona calisaya	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Harmala alkaloids

Sub Class

Not Available

Direct Parent

Harmala alkaloids

Alternative Parents

Substituents

Harman
Pyridoindole
Beta-carboline
3-alkylindole
Quinolizine
Indole or derivatives
Indole
Anisole
Aralkylamine
Alkyl aryl ether
Benzenoid
Piperidine
Heteroaromatic compound
Pyrrole
Tertiary aliphatic amine
Tertiary amine
Azacycle
Organoheterocyclic compound
Secondary amine
Ether
Secondary aliphatic amine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.54	ChemAxon
pKa (Strongest Acidic)	16.35	ChemAxon
pKa (Strongest Basic)	9.34	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	65.31 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	148.8 m³·mol⁻¹	ChemAxon
Polarizability	59.15 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163193171

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine (NP0231148)

MOL for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

3D MOL for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

3D SDF for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

3D-SDF for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

PDB for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

3D PDB for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

SMILES for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

INCHI for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

Structure for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)

3D Structure for NP0231148 ((2s,3r,12bs)-3-ethenyl-9-methoxy-2-{[(1r)-6-methoxy-1h,2h,3h,4h,9h-pyrido[3,4-b]indol-1-yl]methyl}-1h,2h,3h,4h,6h,7h,12h,12bh-indolo[2,3-a]quinolizine)