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Record Information
Version2.0
Created at2022-09-06 11:43:00 UTC
Updated at2022-09-06 11:43:00 UTC
NP-MRD IDNP0231045
Secondary Accession NumbersNone
Natural Product Identification
Common Namemethyl 2-[(3r,4r,6s)-4-ethyl-6-[(2s)-2-ethylhexyl]-6-methyl-1,2-dioxan-3-yl]acetate
DescriptionDihydroplakortin belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2. methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2s)-2-ethylhexyl]-6-methyl-1,2-dioxan-3-yl]acetate is found in Plakortis simplex. methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2s)-2-ethylhexyl]-6-methyl-1,2-dioxan-3-yl]acetate was first documented in 2002 (PMID: 12461008). Based on a literature review a small amount of articles have been published on Dihydroplakortin (PMID: 28273803) (PMID: 21761935) (PMID: 20199093) (PMID: 20135043).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC18H34O4
Average Mass314.4660 Da
Monoisotopic Mass314.24571 Da
IUPAC Namemethyl 2-[(3R,4R,6S)-4-ethyl-6-[(2S)-2-ethylhexyl]-6-methyl-1,2-dioxan-3-yl]acetate
Traditional Namemethyl [(3R,4R,6S)-4-ethyl-6-[(2S)-2-ethylhexyl]-6-methyl-1,2-dioxan-3-yl]acetate
CAS Registry NumberNot Available
SMILES
CCCC[C@H](CC)C[C@@]1(C)C[C@@H](CC)[C@@H](CC(=O)OC)OO1
InChI Identifier
InChI=1S/C18H34O4/c1-6-9-10-14(7-2)12-18(4)13-15(8-3)16(21-22-18)11-17(19)20-5/h14-16H,6-13H2,1-5H3/t14-,15+,16+,18-/m0/s1
InChI KeyDTJLJWQVJZNNIS-LHHMISFZSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Plakortis simplexLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDioxanes
Sub Class1,2-dioxanes
Direct Parent1,2-dioxanes
Alternative Parents
Substituents
  • Ortho-dioxane
  • Methyl ester
  • Dialkyl peroxide
  • Carboxylic acid ester
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.17ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area44.76 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity87.07 m³·mol⁻¹ChemAxon
Polarizability37.3 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8489029
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10313564
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Schirmeister T, Oli S, Wu H, Della Sala G, Costantino V, Seo EJ, Efferth T: Cytotoxicity of Endoperoxides from the Caribbean Sponge Plakortis halichondrioides towards Sensitive and Multidrug-Resistant Leukemia Cells: Acids vs. Esters Activity Evaluation. Mar Drugs. 2017 Mar 3;15(3):63. doi: 10.3390/md15030063. [PubMed:28273803 ]
  2. Gemma S, Kunjir S, Coccone SS, Brindisi M, Moretti V, Brogi S, Novellino E, Basilico N, Parapini S, Taramelli D, Campiani G, Butini S: Synthesis and antiplasmodial activity of bicyclic dioxanes as simplified dihydroplakortin analogues. J Med Chem. 2011 Aug 25;54(16):5949-53. doi: 10.1021/jm200686d. Epub 2011 Jul 29. [PubMed:21761935 ]
  3. Gemma S, Gabellieri E, Sanna Coccone S, Marti F, Taglialatela-Scafati O, Novellino E, Campiani G, Butini S: Synthesis of dihydroplakortin, 6-epi-dihydroplakortin, and their C10-desethyl analogues. J Org Chem. 2010 Apr 2;75(7):2333-40. doi: 10.1021/jo1001559. [PubMed:20199093 ]
  4. Taglialatela-Scafati O, Fattorusso E, Romano A, Scala F, Barone V, Cimino P, Stendardo E, Catalanotti B, Persico M, Fattorusso C: Insight into the mechanism of action of plakortins, simple 1,2-dioxane antimalarials. Org Biomol Chem. 2010 Feb 21;8(4):846-56. doi: 10.1039/b918600j. Epub 2009 Dec 16. [PubMed:20135043 ]
  5. Fattorusso E, Parapini S, Campagnuolo C, Basilico N, Taglialatela-Scafati O, Taramelli D: Activity against Plasmodium falciparum of cycloperoxide compounds obtained from the sponge Plakortis simplex. J Antimicrob Chemother. 2002 Dec;50(6):883-8. doi: 10.1093/jac/dkg008. [PubMed:12461008 ]
  6. LOTUS database [Link]