NP-MRD: Showing NP-Card for 1-eicosyne (NP0230889)

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Record Information

Version

2.0

Created at

2022-09-06 11:29:59 UTC

Updated at

2022-09-06 11:29:59 UTC

NP-MRD ID

NP0230889

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-eicosyne

Description

1-EICOSYNE belongs to the class of organic compounds known as acetylides. Acetylides are compounds arising by replacement of one or both hydrogen atoms of acetylene (ethyne) by a metal or other cationic group. E.G. NaC#CH monosodium acetylide. By extension, analogous compounds derived from terminal acetylenes, RC#CH. The class is limited here to derivatives of acetylene where the hydrogen atom is replaced with an element with similar or lower electronegativity that carbon. 1-eicosyne is found in Basella alba. Based on a literature review very few articles have been published on 1-EICOSYNE.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 58 57  0  0  0  0  0  0  0  0999 V2000
    8.4793    2.7175   -3.3788 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1319    2.0293   -2.4493 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7225    1.1754   -1.3259 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2096    0.9291   -1.3610 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8983    0.0527   -0.1791 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4168   -0.2753   -0.0886 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2384   -1.1488    1.1233 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8263   -1.5656    1.3583 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8988   -0.3775    1.5672 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4748   -0.8634    1.8021 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4307    0.3215    2.0070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8600   -0.0719    2.2484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3869   -0.8442    1.0693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8289   -1.2620    1.2657 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4019   -2.0236    0.1380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4295   -1.5029   -1.2200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1618   -0.2750   -1.5432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6586    0.9595   -0.9032 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5498    2.1225   -1.4387 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9687    1.8347   -1.0507 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7901    3.3101   -4.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0258    1.5916   -0.3453 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2736    0.2200   -1.4382 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6984    1.9107   -1.3302 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9216    0.4091   -2.2918 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1963    0.5442    0.7493 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4271   -0.9047   -0.3300 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7955    0.6244   -0.0100 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0621   -0.8324   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5634   -0.5482    2.0022 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8525   -2.0690    1.0471 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4232   -2.2679    0.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8148   -2.1180    2.3420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2069    0.2495    2.4039 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9052    0.2128    0.6293 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4066   -1.5511    2.6528 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1866   -1.4306    0.8874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4026    0.9104    1.0566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0282    0.9917    2.7862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4369    0.8931    2.3374 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0039   -0.6402    3.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8110   -1.7984    0.9843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2540   -0.2700    0.1367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4256   -0.4472    1.6356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8536   -2.0095    2.1496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9564   -3.0745    0.0848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4784   -2.2691    0.4663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3435   -1.3500   -1.5585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8161   -2.3087   -1.9512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1372   -0.1383   -2.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2744   -0.4031   -1.3290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7622    1.0403    0.1641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6448    1.1919   -1.2803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1605    3.0231   -0.9267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3955    2.2142   -2.5331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4606    1.2176   -1.8426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9530    1.1930   -0.1434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5711    2.7510   -0.9087 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  3  0
 20 56  1  0
 20 57  1  0
 20 58  1  0
 19 54  1  0
 19 55  1  0
 18 52  1  0
 18 53  1  0
 17 50  1  0
 17 51  1  0
 16 48  1  0
 16 49  1  0
 15 46  1  0
 15 47  1  0
 14 44  1  0
 14 45  1  0
 13 42  1  0
 13 43  1  0
 12 40  1  0
 12 41  1  0
 11 38  1  0
 11 39  1  0
 10 36  1  0
 10 37  1  0
  9 34  1  0
  9 35  1  0
  8 32  1  0
  8 33  1  0
  7 30  1  0
  7 31  1  0
  6 28  1  0
  6 29  1  0
  5 26  1  0
  5 27  1  0
  4 24  1  0
  4 25  1  0
  3 22  1  0
  3 23  1  0
  1 21  1  0
M  END


  Mrv1652309062213292D          

 20 19  0  0  0  0            999 V2000
    8.4711    6.5408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1855    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9000    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3289    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0434    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7579    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4724    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1868    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9013    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6158    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3302    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0447    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7592    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4737    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1881    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9026    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6171    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.3315    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0460    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0230889

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCCCCCCC#C

> <INCHI_IDENTIFIER>
InChI=1S/C20H38/c1-3-5-7-9-11-13-15-17-19-20-18-16-14-12-10-8-6-4-2/h1H,4-20H2,2H3

> <INCHI_KEY>
BUSHLWVWPAEVMX-UHFFFAOYSA-N

> <FORMULA>
C20H38

> <MOLECULAR_WEIGHT>
278.524

> <EXACT_MASS>
278.297351224

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
40.39789467195751

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
icos-1-yne

> <JCHEM_LOGP>
8.547944439

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
92.28379999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
1-eicosyne

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      15.813  12.209   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      17.146  11.439   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      18.480  10.669   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      19.814  11.439   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      21.147  10.669   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      22.481  11.439   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      23.815  10.669   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      25.148  11.439   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      26.482  10.669   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      27.816  11.439   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      29.149  10.669   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      30.483  11.439   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      31.817  10.669   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      33.150  11.439   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      34.484  10.669   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      35.818  11.439   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      37.152  10.669   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      38.485  11.439   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      39.819  10.669   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      41.153  11.439   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₈

Average Mass

278.5240 Da

Monoisotopic Mass

278.29735 Da

IUPAC Name

icos-1-yne

Traditional Name

1-eicosyne

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCCCCC#C

InChI Identifier

InChI=1S/C20H38/c1-3-5-7-9-11-13-15-17-19-20-18-16-14-12-10-8-6-4-2/h1H,4-20H2,2H3

InChI Key

BUSHLWVWPAEVMX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Basella alba	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acetylides. Acetylides are compounds arising by replacement of one or both hydrogen atoms of acetylene (ethyne) by a metal or other cationic group. E.G. NaC#CH monosodium acetylide. By extension, analogous compounds derived from terminal acetylenes, RC#CH. The class is limited here to derivatives of acetylene where the hydrogen atom is replaced with an element with similar or lower electronegativity that carbon.

Kingdom

Organic compounds

Super Class

Acetylides

Class

Not Available

Sub Class

Not Available

Direct Parent

Acetylides

Alternative Parents

Substituents

Acetylide
Monosubstituted alkyne
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Alkyne
Acyclic acetylene
Acetylene
Hydrocarbon
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.55	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	92.28 m³·mol⁻¹	ChemAxon
Polarizability	40.4 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

12460

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13001

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-eicosyne (NP0230889)

MOL for NP0230889 (1-eicosyne)

3D MOL for NP0230889 (1-eicosyne)

3D SDF for NP0230889 (1-eicosyne)

3D-SDF for NP0230889 (1-eicosyne)

PDB for NP0230889 (1-eicosyne)

3D PDB for NP0230889 (1-eicosyne)

SMILES for NP0230889 (1-eicosyne)

INCHI for NP0230889 (1-eicosyne)

Structure for NP0230889 (1-eicosyne)

3D Structure for NP0230889 (1-eicosyne)