NP-MRD: Showing NP-Card for (2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate (NP0230119)

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Record Information

Version

2.0

Created at

2022-09-06 10:28:25 UTC

Updated at

2022-09-06 10:28:26 UTC

NP-MRD ID

NP0230119

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate

Description

(2S,3S,4R,4aR,10bR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4aH,6H,10bH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate belongs to the class of organic compounds known as steroid lactones. These are sterol lipids containing a lactone moiety linked to the steroid skeleton. (2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate is found in Diospyros sanza-minika. Based on a literature review very few articles have been published on (2S,3S,4R,4aR,10bR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4aH,6H,10bH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062212282D          

 34 37  0  0  1  0            999 V2000
   -1.3480    2.9388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    2.2243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480    1.5099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    0.7954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480    0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480   -1.3480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -0.6336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -1.3480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1105   -2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9355   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -2.7770    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1105   -3.4914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -4.2059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3645   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -1.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -1.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145   -3.4914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645   -3.4914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    0.0809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -0.6336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -1.3480    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1730    0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5855    0.7954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4105    0.7954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1730    1.5099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5855    2.2243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 17 24  1  0  0  0  0
 24 25  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 29 28  1  6  0  0  0
 16 29  1  0  0  0  0
  9 29  1  0  0  0  0
  5 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  2  0  0  0  0
  3 33  1  0  0  0  0
 33 34  1  0  0  0  0
M  END

     RDKit          3D

 56 59  0  0  0  0  0  0  0  0999 V2000
    6.9666   -0.7982   -2.3413 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9664   -1.2398   -1.0102 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8470   -1.0488   -0.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7170   -0.4202   -0.7644 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6154   -0.2385    0.0182 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3914    0.4182   -0.4840 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2840    0.8444   -1.6412 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3003    0.5884    0.3225 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1015    1.1713    0.0124 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3092    2.3332    0.8695 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4752    3.4415    0.5594 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7252    2.7215    0.7036 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3066    3.0553    2.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2078    1.9312    2.9052 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6630    1.8136    0.0320 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1693    0.6037   -0.6567 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1918   -0.4430   -0.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8031   -1.7805   -0.6852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7596   -2.7669   -0.8017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0970   -2.4719   -1.0115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0543   -3.4930   -1.1271 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4681   -1.1498   -1.1044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7940   -0.8068   -1.3138 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5025   -0.1372   -0.9872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9930    1.1650   -1.0979 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4115   -2.1736   -0.4669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0317   -3.3662   -0.3767 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4878   -1.1458   -0.3586 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9695    0.0890    0.1369 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6544   -0.6834    1.3121 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7506   -1.3060    1.8650 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7644   -1.7538    3.1980 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8447   -1.4824    1.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9655   -2.1143    1.6267 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9507   -1.0197   -2.7937 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1391   -1.2817   -2.9118 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7399    0.3073   -2.3523 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6892   -0.0696   -1.7871 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1097    1.5169   -1.0424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1474    2.0044    1.9316 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0301    4.2419    0.9573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7949    3.7369    0.1777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3375    3.4440    2.0070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7039    3.8734    2.5659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6866    2.1018    3.7523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2237    2.4182   -0.7501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5004    1.4795    0.7156 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8202    0.8188   -1.7100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4931   -3.8091   -0.7325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7069   -4.4375   -1.0484 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5169   -1.4885   -1.4036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9433    1.3907   -1.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2295    0.0355    1.2106 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7878   -0.5455    1.9428 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9729   -1.6362    3.7990 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9855   -2.4377    2.5775 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5 30  2  0
 30 31  1  0
 31 32  1  0
 31 33  2  0
 33 34  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 12 15  1  0
 15 16  1  0
 16 29  1  0
 29 28  1  0
 28 26  1  0
 26 27  2  0
 26 18  1  0
 18 17  2  0
 17 24  1  0
 24 25  1  0
 24 22  2  0
 22 23  1  0
 22 20  1  0
 20 21  1  0
 20 19  2  0
 33  3  1  0
 29  9  1  0
 19 18  1  0
 17 16  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  4 38  1  0
 30 54  1  0
 32 55  1  0
 34 56  1  0
  9 39  1  6
 10 40  1  1
 11 41  1  0
 12 42  1  6
 13 43  1  0
 13 44  1  0
 14 45  1  0
 15 46  1  0
 15 47  1  0
 16 48  1  6
 29 53  1  1
 25 52  1  0
 23 51  1  0
 21 50  1  0
 19 49  1  0
M  END


  Mrv1652309062212282D          

 34 37  0  0  1  0            999 V2000
   -1.3480    2.9388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    2.2243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480    1.5099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    0.7954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480    0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480   -1.3480    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -0.6336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -1.3480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1105   -2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9355   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -2.7770    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1105   -3.4914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -4.2059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3645   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -1.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -1.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145   -3.4914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645   -3.4914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645   -0.6336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    0.0809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -0.6336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -1.3480    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1730    0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5855    0.7954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4105    0.7954    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1730    1.5099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5855    2.2243    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 17 24  1  0  0  0  0
 24 25  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  2  0  0  0  0
 26 28  1  0  0  0  0
 29 28  1  6  0  0  0
 16 29  1  0  0  0  0
  9 29  1  0  0  0  0
  5 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  2  0  0  0  0
  3 33  1  0  0  0  0
 33 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0230119

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=CC(O)=C1O)C(=O)O[C@@H]1[C@@H](O)[C@H](CO)C[C@H]2[C@H]1OC(=O)C1=C2C(O)=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C22H22O12/c1-32-13-4-7(3-11(24)16(13)27)21(30)34-20-15(26)8(6-23)2-9-14-10(22(31)33-19(9)20)5-12(25)17(28)18(14)29/h3-5,8-9,15,19-20,23-29H,2,6H2,1H3/t8-,9+,15-,19+,20+/m0/s1

> <INCHI_KEY>
ZVMLNKIQLDWQAW-OLMQYTLNSA-N

> <FORMULA>
C22H22O12

> <MOLECULAR_WEIGHT>
478.406

> <EXACT_MASS>
478.111126148

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
46.22083796419489

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3S,4R,4aR,10bR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4aH,6H,10bH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate

> <JCHEM_LOGP>
0.7413699919999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.00700982747523

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.891561417336713

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6307494751429736

> <JCHEM_POLAR_SURFACE_AREA>
203.43999999999997

> <JCHEM_REFRACTIVITY>
112.82029999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S,4R,4aR,10bR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4aH,10bH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.516   5.486   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -1.746   4.152   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.516   2.818   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.746   1.485   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.516   0.151   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.746  -1.183   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.516  -2.516   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      -0.206  -1.183   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.564  -2.516   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.206  -3.850   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.746  -3.850   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.564  -5.184   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.206  -6.517   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.564  -7.851   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.104  -5.184   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.874  -3.850   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.414  -3.850   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.184  -2.516   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.724  -2.516   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.494  -3.850   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       9.034  -3.850   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.724  -5.184   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       7.494  -6.517   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.184  -5.184   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.414  -6.517   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       4.414  -1.183   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       5.184   0.151   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       2.874  -1.183   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       2.104  -2.516   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -4.056   0.151   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.826   1.485   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -6.366   1.485   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -4.056   2.818   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -4.826   4.152   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   33                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   30                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   29                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17   29                                                  
CONECT   17   16   18   24                                                  
CONECT   18   17   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   17   25                                                  
CONECT   25   24                                                            
CONECT   26   18   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   16    9                                                  
CONECT   30    5   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31    3   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Value	Source
(2S,3S,4R,4AR,10BR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4ah,6H,10BH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoic acid	Generator

Chemical Formula

C₂₂H₂₂O₁₂

Average Mass

478.4060 Da

Monoisotopic Mass

478.11113 Da

IUPAC Name

(2S,3S,4R,4aR,10bR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4aH,6H,10bH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate

Traditional Name

(2S,3S,4R,4aR,10bR)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1H,2H,3H,4H,4aH,10bH-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC(O)=C1O)C(=O)O[C@@H]1[C@@H](O)[C@H](CO)C[C@H]2[C@H]1OC(=O)C1=C2C(O)=C(O)C(O)=C1

InChI Identifier

InChI=1S/C22H22O12/c1-32-13-4-7(3-11(24)16(13)27)21(30)34-20-15(26)8(6-23)2-9-14-10(22(31)33-19(9)20)5-12(25)17(28)18(14)29/h3-5,8-9,15,19-20,23-29H,2,6H2,1H3/t8-,9+,15-,19+,20+/m0/s1

InChI Key

ZVMLNKIQLDWQAW-OLMQYTLNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Diospyros sanza-minika	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid lactones. These are sterol lipids containing a lactone moiety linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid lactones

Direct Parent

Steroid lactones

Alternative Parents

Substituents

Hydrolyzable tannin
Steroid lactone
3-hydroxysteroid
2-hydroxysteroid
1-hydroxysteroid
Hydroxysteroid
16-oxosteroid
Oxosteroid
Tannin
Gallic acid or derivatives
P-hydroxybenzoic acid alkyl ester
M-hydroxybenzoic acid ester
P-hydroxybenzoic acid ester
Dihydroxybenzoic acid
M-methoxybenzoic acid or derivatives
Methoxyphenol
Isochromane
Benzopyran
Benzoate ester
2-benzopyran
Benzoic acid or derivatives
Benzoyl
Phenoxy compound
Anisole
Catechol
Methoxybenzene
Phenol ether
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Benzenoid
Cyclic alcohol
Lactone
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Carboxylic acid derivative
Alcohol
Organic oxygen compound
Primary alcohol
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.74	ChemAxon
pKa (Strongest Acidic)	7.89	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	203.44 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	112.82 m³·mol⁻¹	ChemAxon
Polarizability	46.22 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162906365

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate (NP0230119)

MOL for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

3D MOL for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

3D SDF for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

3D-SDF for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

PDB for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

3D PDB for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

SMILES for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

INCHI for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

Structure for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)

3D Structure for NP0230119 ((2s,3s,4r,4ar,10br)-3,8,9,10-tetrahydroxy-2-(hydroxymethyl)-6-oxo-1h,2h,3h,4h,4ah,10bh-benzo[c]chromen-4-yl 3,4-dihydroxy-5-methoxybenzoate)