NP-MRD: Showing NP-Card for (1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol (NP0229673)

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Record Information

Version

2.0

Created at

2022-09-06 09:50:33 UTC

Updated at

2022-09-06 09:50:33 UTC

NP-MRD ID

NP0229673

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol

Description

Gyroxanthin belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol is found in Karlodinium veneficum. Based on a literature review very few articles have been published on Gyroxanthin.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062211502D          

 45 47  0  0  1  0            999 V2000
   -9.4237   -6.5408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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 10 58  1  6
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 12 60  1  0
 12 61  1  0
 14 62  1  0
 14 63  1  0
 14 64  1  0
 15 65  1  0
 21 72  1  0
 22 73  1  0
 23 74  1  0
 24 75  1  0
 26 76  1  0
 26 77  1  0
 26 78  1  0
 27 79  1  0
 28 80  1  0
 29 81  1  0
 44 97  1  0
 44 98  1  0
 45 99  1  0
 36 82  1  0
 36 83  1  0
 36 84  1  0
 37 85  1  0
 37 86  1  0
 38 87  1  6
 39 88  1  0
 40 89  1  0
 40 90  1  0
 42 91  1  0
 42 92  1  0
 42 93  1  0
 43 94  1  0
 43 95  1  0
 43 96  1  0
M  END


  Mrv1652309062211502D          

 45 47  0  0  1  0            999 V2000
   -9.4237   -6.5408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0112   -7.2552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4237   -7.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2487   -7.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0737   -7.9697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4862   -8.6842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7109   -8.9663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6294   -9.4966    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3112   -8.6842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7237   -7.9697    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -13.5487   -7.9697    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3112   -7.2552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4862   -7.2552    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.4574   -6.4307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7865   -6.8181    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1862   -7.2552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7737   -6.5408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9487   -6.5408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5362   -5.8263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9487   -5.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7112   -5.8263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2987   -5.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4737   -5.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0612   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2362   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8237   -5.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8237   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9987   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5862   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7612   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3487   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0638   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4763   -0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2382   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4763   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0638    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1908    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9053   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6197    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9053   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1908   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5781   -1.9659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8035   -1.9659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3487   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4763   -3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  1  0  0  0
  2 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  3  0  0  0  0
 33 32  1  1  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  1  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  1  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 33 41  1  0  0  0  0
 41 42  1  0  0  0  0
 41 43  1  0  0  0  0
 30 44  1  0  0  0  0
 44 45  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0229673

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(\C=C\C=C(/C)C=C=C1C(C)(C)C[C@H](O)C[C@@]1(C)O)=C/C=C/C=C(\C)/C=C/C=C(\CO)C#C[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H54O5/c1-29(16-12-17-31(3)20-21-35-36(4,5)24-33(42)26-38(35,8)44)14-10-11-15-30(2)18-13-19-32(28-41)22-23-40-37(6,7)25-34(43)27-39(40,9)45-40/h10-20,33-34,41-44H,24-28H2,1-9H3/b11-10+,16-12+,18-13+,29-14+,30-15+,31-17+,32-19-/t21?,33-,34-,38+,39+,40-/m0/s1

> <INCHI_KEY>
PLPBVFIAZITKRV-DOSQSNLXSA-N

> <FORMULA>
C40H54O5

> <MOLECULAR_WEIGHT>
614.867

> <EXACT_MASS>
614.397124839

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
99

> <JCHEM_AVERAGE_POLARIZABILITY>
75.1306876479152

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,3S)-6-[(3E,5E,7E,9E,11E,13E,15Z)-17-hydroxy-16-{2-[(1R,4S,6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol

> <JCHEM_LOGP>
5.357795055666667

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.886997439202798

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.998905221800044

> <JCHEM_PKA_STRONGEST_BASIC>
-2.4230051309767866

> <JCHEM_POLAR_SURFACE_AREA>
93.45

> <JCHEM_REFRACTIVITY>
194.05060000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S)-6-[(3E,5E,7E,9E,11E,13E,15Z)-17-hydroxy-16-{2-[(1R,4S,6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0     -17.591 -12.209   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -16.821 -13.543   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -17.591 -14.877   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -19.131 -14.877   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -20.671 -14.877   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -21.441 -16.210   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -19.994 -16.737   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -21.708 -17.727   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -22.981 -16.210   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -23.751 -14.877   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0     -25.291 -14.877   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0     -22.981 -13.543   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -21.441 -13.543   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -21.387 -12.004   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0     -20.135 -12.727   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0     -15.281 -13.543   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -14.511 -12.209   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -12.971 -12.209   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -12.201 -10.876   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -12.971  -9.542   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -10.661 -10.876   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -9.891  -9.542   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -8.351  -9.542   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -7.581  -8.208   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -6.041  -8.208   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -5.271  -9.542   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -5.271  -6.875   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.731  -6.875   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -2.961  -5.541   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -1.421  -5.541   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -0.651  -4.207   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.119  -2.874   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.889  -1.540   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -0.445  -0.770   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       0.889  -0.000   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       0.119   1.334   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.223   0.770   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       3.556  -0.000   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0       4.890   0.770   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0       3.556  -1.540   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       2.223  -2.310   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       2.946  -3.670   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       1.500  -3.670   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -0.651  -6.875   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0       0.889  -6.875   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   13                                                  
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12    5   14   15                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    2   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   44                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34   35   41                                             
CONECT   34   33   35                                                       
CONECT   35   34   33   36   37                                             
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41                                                       
CONECT   41   40   33   42   43                                             
CONECT   42   41                                                            
CONECT   43   41                                                            
CONECT   44   30   45                                                       
CONECT   45   44                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   94    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₀H₅₄O₅

Average Mass

614.8670 Da

Monoisotopic Mass

614.39712 Da

IUPAC Name

(1R,3S)-6-[(3E,5E,7E,9E,11E,13E,15Z)-17-hydroxy-16-{2-[(1R,4S,6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol

Traditional Name

CAS Registry Number

Not Available

SMILES

C\C(\C=C\C=C(/C)C=C=C1C(C)(C)C[C@H](O)C[C@@]1(C)O)=C/C=C/C=C(\C)/C=C/C=C(\CO)C#C[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C

InChI Identifier

InChI=1S/C40H54O5/c1-29(16-12-17-31(3)20-21-35-36(4,5)24-33(42)26-38(35,8)44)14-10-11-15-30(2)18-13-19-32(28-41)22-23-40-37(6,7)25-34(43)27-39(40,9)45-40/h10-20,33-34,41-44H,24-28H2,1-9H3/b11-10+,16-12+,18-13+,29-14+,30-15+,31-17+,32-19-/t21?,33-,34-,38+,39+,40-/m0/s1

InChI Key

PLPBVFIAZITKRV-DOSQSNLXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Karlodinium veneficum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Long chain fatty alcohol
Fatty alcohol
Oxepane
Fatty acyl
Ynone
Cyclic alcohol
Tertiary alcohol
Secondary alcohol
Dialkyl ether
Oxirane
Ether
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Hydrocarbon derivative
Alcohol
Organooxygen compound
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.36	ChemAxon
pKa (Strongest Acidic)	14	ChemAxon
pKa (Strongest Basic)	-2.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	93.45 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	194.05 m³·mol⁻¹	ChemAxon
Polarizability	75.13 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

16737964

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15511236

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol (NP0229673)

MOL for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

3D MOL for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

3D SDF for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

3D-SDF for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

PDB for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

3D PDB for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

SMILES for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

INCHI for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

Structure for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)

3D Structure for NP0229673 ((1r,3s)-6-[(3e,5e,7e,9e,11e,13e,15z)-17-hydroxy-16-{2-[(1r,4s,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl}-3,7,12-trimethylheptadeca-1,3,5,7,9,11,13,15-octaen-1-ylidene]-1,5,5-trimethylcyclohexane-1,3-diol)