NP-MRD: Showing NP-Card for vitamin f (NP0228531)

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Record Information

Version

2.0

Created at

2022-09-06 08:13:44 UTC

Updated at

2022-09-06 08:13:44 UTC

NP-MRD ID

NP0228531

Secondary Accession Numbers

None

Natural Product Identification

Common Name

vitamin f

Description

vitamin f was first documented in 1940 (PMID: 16747273).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 54 53  0  0  0  0  0  0  0  0999 V2000
    8.9282   -1.7156    1.5151 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7066   -0.7807    1.4716 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6981   -0.0657    0.1608 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5498    0.8913    0.0220 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2542    0.1276    0.1329 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0741    1.0329   -0.0136 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1734    0.8746   -0.9776 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0091    1.7921   -1.0980 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7402    1.0364   -0.9717 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7774   -0.2693   -0.7776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4634   -1.0721   -0.6445 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6205   -0.1457   -0.7688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5556   -0.2209   -1.6844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7009    0.7169   -1.7873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9775   -0.0360   -1.6525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8068    0.2829   -0.6457 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0896   -0.4473   -0.4803 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1461   -1.1362    0.8627 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0226   -0.1075    1.9498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1430    0.8533    1.8251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0825    1.8464    1.0607 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2854    0.6360    2.5814 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9503   -2.3118    2.4366 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9961   -2.3197    0.5984 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8304   -1.0407    1.5339 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7759   -0.1187    2.3322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8348   -1.4589    1.5521 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6483    0.5041   -0.0148 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6121   -0.8203   -0.6758 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6286    1.3312   -0.9967 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6064    1.7151    0.7807 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1941   -0.4678    1.0584 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2237   -0.5804   -0.7202 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9232    1.8587    0.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3282    0.0543   -1.6666 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0239    2.5425   -0.2670 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0489    2.3945   -2.0293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1976    1.5970   -1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7346   -0.7638   -0.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4716   -1.6233    0.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4726   -1.8484   -1.4431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6921    0.6540   -0.0399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4907   -1.0162   -2.4124 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6531    1.1483   -2.8270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6502    1.5383   -1.0589 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2468   -0.8215   -2.3373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5059    1.0713    0.0155 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9228    0.2625   -0.6238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2059   -1.2151   -1.2945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1582   -1.6313    0.9407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4061   -1.9434    0.9498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0536    0.4227    1.8536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0733   -0.5626    2.9622 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1761    0.7474    2.0753 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 22  1  0
 20 21  2  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  0
  2 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
 10 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 14 44  1  0
 14 45  1  0
 15 46  1  0
 16 47  1  0
 17 48  1  0
 17 49  1  0
 18 50  1  0
 18 51  1  0
 19 52  1  0
 19 53  1  0
 22 54  1  0
M  END

  Mrv0541 02231217452D          

 22 21  0  0  0  0            999 V2000
   -8.0506    6.0770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362    5.6645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362    4.8395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    4.4270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9072    3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9072    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1927    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4783    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7638    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0228531

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC\C=C\C\C=C\C\C=C\C\C=C\CCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/b7-6+,10-9+,13-12+,16-15+

> <INCHI_KEY>
YZXBAPSDXZZRGB-CGRWFSSPSA-N

> <FORMULA>
C20H32O2

> <MOLECULAR_WEIGHT>
304.4669

> <EXACT_MASS>
304.240230268

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
37.366846985434506

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5E,8E,11E,14E)-icosa-5,8,11,14-tetraenoic acid

> <ALOGPS_LOGP>
6.80

> <JCHEM_LOGP>
6.587170811

> <ALOGPS_LOGS>
-6.30

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.819771840522258

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
99.954

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.51e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
arachidonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  C   UNK     0     -15.028  11.344   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -13.694  10.574   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -13.694   9.034   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -12.361   8.264   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -12.361   6.724   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -11.027   5.954   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -11.027   4.414   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -9.693   3.644   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -8.359   4.414   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -7.026   3.644   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.692   4.414   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.358   3.644   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.358   2.104   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.025   1.334   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.691   2.104   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.311   2.104   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       4.977  -0.206   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂O₂

Average Mass

304.4669 Da

Monoisotopic Mass

304.24023 Da

IUPAC Name

(5E,8E,11E,14E)-icosa-5,8,11,14-tetraenoic acid

Traditional Name

arachidonic acid

CAS Registry Number

Not Available

SMILES

CCCCC\C=C\C\C=C\C\C=C\C\C=C\CCCC(O)=O

InChI Identifier

InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/b7-6+,10-9+,13-12+,16-15+

InChI Key

YZXBAPSDXZZRGB-CGRWFSSPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Unsaturated fatty acids (LMFA01030393 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.8	ALOGPS
logP	6.59	ChemAxon
logS	-6.3	ALOGPS
pKa (Strongest Acidic)	4.82	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	99.95 m³·mol⁻¹	ChemAxon
Polarizability	37.37 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

DB04557

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Arachidonic acid

METLIN ID

Not Available

PubChem Compound

5312542

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Dolby DE, Nunn LC, Smedley-Maclean I: The constitution of arachidonic acid (preliminary communication). Biochem J. 1940 Nov;34(10-11):1422-6. doi: 10.1042/bj0341422. [PubMed:16747273 ]
Smedley-Maclean I, Nunn LC: Fat-deficiency disease of rats. The effect of doses of methyl arachidonate and linoleate on fat metabolism, with a note on the estimation of arachidonic acid. Biochem J. 1940 Jun;34(6):884-902. doi: 10.1042/bj0340884. [PubMed:16747233 ]
LOTUS database [Link]

Showing NP-Card for vitamin f (NP0228531)

MOL for NP0228531 (vitamin f)

3D MOL for NP0228531 (vitamin f)

3D SDF for NP0228531 (vitamin f)

3D-SDF for NP0228531 (vitamin f)

PDB for NP0228531 (vitamin f)

3D PDB for NP0228531 (vitamin f)

SMILES for NP0228531 (vitamin f)

INCHI for NP0228531 (vitamin f)

Structure for NP0228531 (vitamin f)

3D Structure for NP0228531 (vitamin f)