NP-MRD: Showing NP-Card for (3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium (NP0227408)

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Record Information

Version

2.0

Created at

2022-09-06 06:43:09 UTC

Updated at

2022-09-06 06:43:09 UTC

NP-MRD ID

NP0227408

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium

Description

(3-{[(2S,3S,4S,5S,6S)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2R,3R,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxy-7H-chromen-7-ylidene)[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium belongs to the class of organic compounds known as anthocyanidin-7-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C7-position. (3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium is found in Meconopsis betonicifolia and Ranunculus asiaticus. Based on a literature review very few articles have been published on (3-{[(2S,3S,4S,5S,6S)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2R,3R,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxy-7H-chromen-7-ylidene)[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062208432D          

 58 63  0  0  1  0            999 V2000
    2.8579    5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 O   0  3  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2868    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2868    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  3  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 21 30  1  0  0  0  0
 30 31  1  6  0  0  0
 19 32  1  0  0  0  0
 32 33  2  0  0  0  0
 15 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 13 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 41 43  2  0  0  0  0
 36 43  1  0  0  0  0
 11 44  1  0  0  0  0
 44 45  1  1  0  0  0
 46 45  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  6  0  0  0
 49 51  1  0  0  0  0
 51 52  1  6  0  0  0
 51 53  1  0  0  0  0
 46 53  1  0  0  0  0
 53 54  1  6  0  0  0
 44 55  1  0  0  0  0
 55 56  1  1  0  0  0
 55 57  1  0  0  0  0
  9 57  1  0  0  0  0
 57 58  1  6  0  0  0
M  CHG  1  20   1
M  END

     RDKit          3D

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   -4.5464    5.2948    0.2569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5270    5.7072    0.8677 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6133    3.9672   -0.1054 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5321    3.1314    0.2333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7605    1.6907   -0.2667 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6695    0.9893    0.1306 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2430    0.0641   -0.7777 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3017   -0.8466   -0.2774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0583   -0.6116   -0.1436 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4770    0.6950   -0.4076 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8132    0.9741   -0.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3851    2.2059   -0.5105 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5717    3.2673   -0.8883 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7462    2.4144   -0.3689 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.7985    1.6630    0.1067 O   0  0  0  0  0  3  0  0  0  0  0  0
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    7.7581    1.4286    1.2348 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3535   -7.0474    1.3349 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0220   -4.8360    0.6125 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3221   -5.2868    0.4149 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7648   -3.4813    0.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3829   -0.7063   -1.4097 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3000   -1.0598   -0.4339 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5652   -2.4107   -0.3300 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1929   -2.9056    0.8768 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1875   -3.1009    1.8087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2131   -4.1190    1.3428 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.4603   -3.6409    1.7265 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.3897   -4.6675   -0.6923 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8516    2.3828   -2.3215 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6256    8.8123    2.0699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6283    5.9277    0.3223 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.6791    1.2784    0.2278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6626    0.6694   -1.5463 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1810    1.4836   -0.6813 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.1280    3.3993   -0.5577 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4257   -0.0553    1.1272 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1474    2.8111   -0.2429 H   0  0  0  0  0  0  0  0  0  0  0  0
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   10.2432    4.7122    0.9384 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8666    1.5870   -1.1887 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4201    0.5392    0.1330 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8936   -2.8881   -1.1140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7087   -3.5205    2.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6476   -2.1406    2.0828 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.4015   -0.8143   -3.1279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8368    2.3342   -2.0003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0959    3.2342   -2.7235 H   0  0  0  0  0  0  0  0  0  0  0  0
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 19 18  1  0
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  9  8  1  0
  8  7  1  0
  7  5  1  0
  5  6  2  0
  5  4  1  0
  4  2  1  0
  2  3  1  0
  2  1  2  0
  9 57  1  0
 57 58  1  0
 57 55  1  0
 55 56  1  0
 55 44  1  0
 44 45  1  0
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 28 26  1  0
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 26 23  1  0
 32 19  1  0
 43 36  1  0
 33 15  1  0
 44 11  1  0
 53 46  1  0
 25 73  1  0
 24 71  1  0
 24 72  1  0
 23 70  1  6
 21 69  1  1
 18 68  1  0
 17 67  1  0
 14 66  1  0
 11 65  1  6
  9 64  1  1
  8 62  1  0
  8 63  1  0
  4 60  1  0
  4 61  1  0
  3 59  1  0
 57 98  1  1
 58 99  1  0
 55 96  1  6
 56 97  1  0
 44 86  1  6
 46 87  1  6
 48 88  1  0
 48 89  1  0
 49 90  1  1
 50 91  1  0
 51 92  1  1
 52 93  1  0
 53 94  1  6
 54 95  1  0
 32 80  1  0
 37 81  1  0
 38 82  1  0
 40 83  1  0
 42 84  1  0
 43 85  1  0
 30 78  1  6
 31 79  1  0
 28 76  1  1
 29 77  1  0
 26 74  1  6
 27 75  1  0
M  CHG  1  20   1
M  END


  Mrv1652309062208432D          

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   -3.5724    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2868    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.0000    2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  3  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 21 30  1  0  0  0  0
 30 31  1  6  0  0  0
 19 32  1  0  0  0  0
 32 33  2  0  0  0  0
 15 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 13 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 39 41  1  0  0  0  0
 41 42  1  0  0  0  0
 41 43  2  0  0  0  0
 36 43  1  0  0  0  0
 11 44  1  0  0  0  0
 44 45  1  1  0  0  0
 46 45  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  6  0  0  0
 49 51  1  0  0  0  0
 51 52  1  6  0  0  0
 51 53  1  0  0  0  0
 46 53  1  0  0  0  0
 53 54  1  6  0  0  0
 44 55  1  0  0  0  0
 55 56  1  1  0  0  0
 55 57  1  0  0  0  0
  9 57  1  0  0  0  0
 57 58  1  6  0  0  0
M  CHG  1  20   1
M  END
> <DATABASE_ID>
NP0227408

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@@H]1O[C@@H]([O+]=C2C=C(O)C3=CC(O[C@@H]4O[C@@H](COC(=O)CC(O)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@H]4OC[C@@H](O)[C@@H](O)[C@H]4O)=C(OC3=C2)C2=CC=C(O)C(O)=C2)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C35H40O23/c36-8-20-25(45)27(47)30(50)34(56-20)53-12-4-15(38)13-6-19(31(54-18(13)5-12)11-1-2-14(37)16(39)3-11)55-35-32(58-33-29(49)24(44)17(40)9-52-33)28(48)26(46)21(57-35)10-51-23(43)7-22(41)42/h1-6,17,20-21,24-30,32-36,40,44-50H,7-10H2,(H3-,37,38,39,41,42)/p+1/t17-,20+,21+,24-,25-,26-,27+,28+,29-,30-,32+,33-,34-,35-/m1/s1

> <INCHI_KEY>
LIHFAKVUZYFNPM-DKIHBDHHSA-O

> <FORMULA>
C35H41O23

> <MOLECULAR_WEIGHT>
829.689

> <EXACT_MASS>
829.203314

> <JCHEM_ACCEPTOR_COUNT>
22

> <JCHEM_ATOM_COUNT>
99

> <JCHEM_AVERAGE_POLARIZABILITY>
77.09779347251887

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
13

> <JCHEM_FORMAL_CHARGE>
1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3-{[(2S,3S,4S,5S,6S)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2R,3R,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxy-7H-chromen-7-ylidene)[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium

> <JCHEM_LOGP>
-7.432599999999998

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
3.601107080868004

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.8529714956486973

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6858575040071697

> <JCHEM_POLAR_SURFACE_AREA>
395.8800000000001

> <JCHEM_REFRACTIVITY>
198.25860000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3-{[(2S,3S,4S,5S,6S)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2R,3R,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2S,3R,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  O   UNK     0       5.335  10.780   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       5.335   9.240   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.668   8.470   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.001   8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001   6.930   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.335   6.160   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       2.667   6.160   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+1
HETATM   21  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       5.335  -9.240   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       8.002  -9.240   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      10.669  -7.700   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      10.669  -4.620   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -4.001  -5.390   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -4.001  -2.310   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      -2.667   1.540   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      -4.001   3.850   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -5.335   4.620   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -6.668   3.850   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -8.002   4.620   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      -6.668   2.310   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      -8.002   1.540   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0      -5.335  -0.000   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0      -2.667   4.620   0.000  0.00  0.00           O+0
HETATM   57  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM   58  O   UNK     0       0.000   6.160   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   57                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   44                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   35                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   33                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   32                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   30                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   26                                                  
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   23   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   21   31                                                  
CONECT   31   30                                                            
CONECT   32   19   33                                                       
CONECT   33   32   15   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34   13   36                                                  
CONECT   36   35   37   43                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   36                                                       
CONECT   44   11   45   55                                                  
CONECT   45   44   46                                                       
CONECT   46   45   47   53                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51   46   54                                                  
CONECT   54   53                                                            
CONECT   55   44   56   57                                                  
CONECT   56   55                                                            
CONECT   57   55    9   58                                                  
CONECT   58   57                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  126    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₅H₄₁O₂₃

Average Mass

829.6890 Da

Monoisotopic Mass

829.20331 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

OC[C@@H]1O[C@@H]([O+]=C2C=C(O)C3=CC(O[C@@H]4O[C@@H](COC(=O)CC(O)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@H]4OC[C@@H](O)[C@@H](O)[C@H]4O)=C(OC3=C2)C2=CC=C(O)C(O)=C2)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C35H40O23/c36-8-20-25(45)27(47)30(50)34(56-20)53-12-4-15(38)13-6-19(31(54-18(13)5-12)11-1-2-14(37)16(39)3-11)55-35-32(58-33-29(49)24(44)17(40)9-52-33)28(48)26(46)21(57-35)10-51-23(43)7-22(41)42/h1-6,17,20-21,24-30,32-36,40,44-50H,7-10H2,(H3-,37,38,39,41,42)/p+1/t17-,20+,21+,24-,25-,26-,27+,28+,29-,30-,32+,33-,34-,35-/m1/s1

InChI Key

LIHFAKVUZYFNPM-DKIHBDHHSA-O

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Meconopsis betonicifolia	LOTUS Database	35616633
Ranunculus asiaticus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as anthocyanidin-7-o-glycosides. These are phenolic compounds containing one anthocyanidin moiety which is O-glycosidically linked to a carbohydrate moiety at the C7-position.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Flavonoid glycosides

Direct Parent

Anthocyanidin-7-O-Glycosides

Alternative Parents

Substituents

Anthocyanidin-7-o-glycoside
Anthocyanidin-3-o-glycoside
Flavonoid-7-o-glycoside
Flavonoid-3-o-glycoside
Hydroxyflavonoid
5-hydroxyflavonoid
4'-hydroxyflavonoid
3'-hydroxyflavonoid
Anthocyanidin
Phenolic glycoside
O-glycosyl compound
Glycosyl compound
Disaccharide
1-benzopyran
Benzopyran
Catechol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
1,3-dicarbonyl compound
Oxane
Dicarboxylic acid or derivatives
Monocyclic benzene moiety
Heteroaromatic compound
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Carboxylic acid
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Organic cation
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-7.4	ChemAxon
pKa (Strongest Acidic)	2.85	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	22	ChemAxon
Hydrogen Donor Count	13	ChemAxon
Polar Surface Area	395.88 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	198.26 m³·mol⁻¹	ChemAxon
Polarizability	77.1 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163186933

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium (NP0227408)

MOL for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

3D MOL for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

3D SDF for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

3D-SDF for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

PDB for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

3D PDB for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

SMILES for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

INCHI for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

Structure for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)

3D Structure for NP0227408 ((3-{[(2s,3s,4s,5s,6s)-6-{[(2-carboxyacetyl)oxy]methyl}-4,5-dihydroxy-3-{[(2r,3r,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5-hydroxychromen-7-ylidene)[(2s,3r,4s,5s,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxidanium)