NP-MRD: Showing NP-Card for n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid (NP0226821)

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Record Information

Version

2.0

Created at

2022-09-06 05:58:50 UTC

Updated at

2022-09-06 05:58:50 UTC

NP-MRD ID

NP0226821

Secondary Accession Numbers

None

Natural Product Identification

Common Name

n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid

Description

N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)ethanimidic acid belongs to the class of organic compounds known as indoles. Indoles are compounds containing an indole moiety, which consists of pyrrole ring fused to benzene to form 2,3-benzopyrrole. n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid is found in Agelenopsis aperta. N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)ethanimidic acid is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004261512122D          

 31 32  0  0  0  0            999 V2000
   12.5420   -8.8629    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2565   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9709   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6854   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3999   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1144   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.8288   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5433   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2578   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9722   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.6867   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4012   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1157   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8301   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.8301   -7.6254    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.5446   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2591   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.9735   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6880   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   25.4025   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.4025   -9.6879    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.1170   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.8314   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.5851   -8.5274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.1371   -9.1405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9621   -9.1405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3746   -9.8549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9621  -10.5694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.1371  -10.5694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.7246   -9.8549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.9177   -9.6834    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 25 30  1  0  0  0  0
 30 31  1  0  0  0  0
 23 31  1  0  0  0  0
M  END

     RDKit          3D

 71 72  0  0  0  0  0  0  0  0999 V2000
    8.7017   -1.1412   -1.8436 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1667   -1.9279   -0.7752 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7302   -1.5799    0.5625 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6032   -0.2185    1.0739 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3233    0.4475    1.3017 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4909    0.6502    0.1654 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3435    1.5228    0.5107 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6203    1.7497   -0.8155 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0637    0.5551   -1.4574 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0978   -0.2041   -0.8199 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7761    0.2126   -0.6088 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6042    1.2075    0.4755 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2565    1.7999    0.6697 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8882    1.0837    0.9581 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1836    0.8835    2.2307 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4651    0.2480   -0.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9378   -0.0989    0.3446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3902   -0.9730   -0.7951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7861   -1.3419   -0.6395 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3222   -2.1667   -1.6725 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6105   -2.5603   -2.6431 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7373   -2.5701   -1.6231 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4932   -1.5840   -0.7998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9267   -1.7688    0.4820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5802   -0.6360    0.9219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1943   -0.2759    2.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7710    0.9780    2.2437 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7361    1.8818    1.1951 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1181    1.4962    0.0328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5278    0.2539   -0.1482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8755   -0.3405   -1.1573 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.7090   -1.2901   -2.0473 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1505   -1.2473   -2.7345 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5774   -3.0047   -0.9641 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0975   -2.0523   -0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4754   -2.3860    1.3131 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8614   -1.7642    0.4415 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3062    0.4283    0.4504 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1622   -0.2101    2.0838 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7699   -0.0597    2.1525 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5681    1.4636    1.7511 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0130   -0.2559   -0.0662 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7039    2.4846    0.9295 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6772    1.0449    1.2374 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4693    2.1134   -1.5618 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0032    2.6442   -0.7826 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9194   -0.1529   -1.7912 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6959    0.9273   -2.4959 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4231   -1.0717   -0.3483 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1635   -0.7197   -0.3042 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2692    0.6083   -1.5248 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9809    0.7315    1.4452 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2830    2.0790    0.2874 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3925    2.5886    1.4841 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1202    2.4948   -0.2422 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4374    0.5876    2.7759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5029    0.6864   -1.0169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0155   -0.8040   -0.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5371    0.8364    0.3923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9908   -0.6530    1.2807 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7770   -1.9161   -0.7502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1730   -0.4392   -1.7288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3903   -1.0465    0.1540 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9090   -3.5995   -1.2323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1203   -2.4703   -2.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7787   -2.6664    1.0634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2148   -0.9913    2.8996 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2559    1.2998    3.1436 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1763    2.8468    1.3034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0756    2.1800   -0.8000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6714    0.0487   -2.0906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 23  1  0
 30 25  1  0
  1 32  1  0
  1 33  1  0
  2 34  1  0
  2 35  1  0
  3 36  1  0
  3 37  1  0
  4 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  7 43  1  0
  7 44  1  0
  8 45  1  0
  8 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  0
 11 50  1  0
 11 51  1  0
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 15 56  1  0
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 22 64  1  0
 22 65  1  0
 24 66  1  0
 26 67  1  0
 27 68  1  0
 28 69  1  0
 29 70  1  0
 31 71  1  0
M  END


  Mrv1533004261512122D          

 31 32  0  0  0  0            999 V2000
   12.5420   -8.8629    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.2565   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9709   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6854   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3999   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1144   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   16.8288   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5433   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2578   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9722   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.6867   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4012   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1157   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.8301   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   21.8301   -7.6254    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.5446   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2591   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.9735   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6880   -8.4504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   25.4025   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.4025   -9.6879    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.1170   -8.4504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.8314   -8.8629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.5851   -8.5274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.1371   -9.1405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9621   -9.1405    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3746   -9.8549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9621  -10.5694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.1371  -10.5694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.7246   -9.8549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.9177   -9.6834    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 25 30  1  0  0  0  0
 30 31  1  0  0  0  0
 23 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0226821

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NCCCCNCCCNCCCN(O)CCCNC(=O)CC1=CC2=CC=CC=C2N1

> <INCHI_IDENTIFIER>
InChI=1S/C23H40N6O2/c24-10-3-4-11-25-12-5-13-26-14-6-16-29(31)17-7-15-27-23(30)19-21-18-20-8-1-2-9-22(20)28-21/h1-2,8-9,18,25-26,28,31H,3-7,10-17,19,24H2,(H,27,30)

> <INCHI_KEY>
MFKGCXPMMXYWML-UHFFFAOYSA-N

> <FORMULA>
C23H40N6O2

> <MOLECULAR_WEIGHT>
432.613

> <EXACT_MASS>
432.321274552

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
51.8418722915233

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)acetamide

> <ALOGPS_LOGP>
1.38

> <JCHEM_LOGP>
-0.4683495106666673

> <ALOGPS_LOGS>
-4.37

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
3

> <JCHEM_PKA>
15.737247310397397

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.183011164149619

> <JCHEM_PKA_STRONGEST_BASIC>
10.92801562993322

> <JCHEM_POLAR_SURFACE_AREA>
118.44

> <JCHEM_REFRACTIVITY>
127.0423

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.85e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)acetamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  N   UNK     0      23.412 -16.544   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      24.745 -15.774   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      26.079 -16.544   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      27.413 -15.774   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      28.746 -16.544   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      30.080 -15.774   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      31.414 -16.544   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      32.748 -15.774   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      34.081 -16.544   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      35.415 -15.774   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0      36.749 -16.544   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      38.082 -15.774   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      39.416 -16.544   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0      40.750 -15.774   0.000  0.00  0.00           N+0
HETATM   15  O   UNK     0      40.750 -14.234   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      42.083 -16.544   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      43.417 -15.774   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      44.751 -16.544   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0      46.084 -15.774   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0      47.418 -16.544   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      47.418 -18.084   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      48.752 -15.774   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      50.085 -16.544   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      51.492 -15.918   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      52.523 -17.062   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      54.063 -17.062   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      54.833 -18.396   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      54.063 -19.730   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      52.523 -19.730   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      51.753 -18.396   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0      50.246 -18.076   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24   31                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   25   31                                                  
CONECT   31   30   23                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   64    0
END

View in JSmol

Synonyms

Value	Source
N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)ethanimidate	Generator

Chemical Formula

C₂₃H₄₀N₆O₂

Average Mass

432.6130 Da

Monoisotopic Mass

432.32127 Da

IUPAC Name

N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)acetamide

Traditional Name

N-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1H-indol-2-yl)acetamide

CAS Registry Number

Not Available

SMILES

NCCCCNCCCNCCCN(O)CCCNC(=O)CC1=CC2=CC=CC=C2N1

InChI Identifier

InChI=1S/C23H40N6O2/c24-10-3-4-11-25-12-5-13-26-14-6-16-29(31)17-7-15-27-23(30)19-21-18-20-8-1-2-9-22(20)28-21/h1-2,8-9,18,25-26,28,31H,3-7,10-17,19,24H2,(H,27,30)

InChI Key

MFKGCXPMMXYWML-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Agelenopsis aperta	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indoles. Indoles are compounds containing an indole moiety, which consists of pyrrole ring fused to benzene to form 2,3-benzopyrrole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indoles

Direct Parent

Indoles

Alternative Parents

Substituents

Indole
Substituted pyrrole
Benzenoid
Pyrrole
Heteroaromatic compound
Carboximidic acid
Carboximidic acid derivative
Secondary aliphatic amine
Secondary amine
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
N-organohydroxylamine
Azacycle
Primary amine
Organooxygen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Amine
Organic nitrogen compound
Primary aliphatic amine
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.38	ALOGPS
logP	-0.47	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	15.18	ChemAxon
pKa (Strongest Basic)	10.93	ChemAxon
Physiological Charge	3	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	118.44 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	127.04 m³·mol⁻¹	ChemAxon
Polarizability	51.84 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid (NP0226821)

MOL for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

3D MOL for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

3D SDF for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

3D-SDF for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

PDB for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

3D PDB for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

SMILES for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

INCHI for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

Structure for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)

3D Structure for NP0226821 (n-(3-{[3-({3-[(4-aminobutyl)amino]propyl}amino)propyl](hydroxy)amino}propyl)-2-(1h-indol-2-yl)ethanimidic acid)