NP-MRD: Showing NP-Card for (3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one (NP0226575)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-06 05:39:50 UTC

Updated at

2022-09-06 05:39:50 UTC

NP-MRD ID

NP0226575

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one

Description

Sophoronol B belongs to the class of organic compounds known as 3'-prenylated isoflavanones. These are isoflavanones featuring a C5-isoprenoid unit at the 3'-position. Based on a literature review very few articles have been published on sophoronol B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062207392D          

 29 32  0  0  1  0            999 V2000
    3.4222   -0.7255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7077   -1.1380    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7077   -1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9933   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2788   -1.9630    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8091   -1.3310    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9966   -2.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1842   -2.8815    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3461   -2.2495    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1586   -2.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6889   -1.7608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5014   -1.9040    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4067   -0.9855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5943   -0.8423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3121   -0.0670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0640   -1.4743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7485   -1.3310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0307   -0.5558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9933   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7077   -3.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4222   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4222   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1367   -1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8512   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8512   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6636   -3.0572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1333   -3.9757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9458   -4.1190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1367   -3.6130    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 17 18  2  0  0  0  0
  4 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
  3 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 25 29  1  0  0  0  0
 21 29  1  0  0  0  0
M  END

     RDKit          3D

 49 52  0  0  0  0  0  0  0  0999 V2000
   -0.4849   -2.4608    1.6378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2733   -1.0426    1.5013 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7266   -0.4168    0.3559 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1347   -0.2396   -0.6910 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5234   -0.5923   -0.7499 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0761   -0.2384   -2.0202 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9607   -1.9973   -0.5307 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3719   -1.9817   -0.9076 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2485   -1.0472   -0.4086 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6208   -1.2148   -0.5060 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4482   -0.2489    0.0111 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8386   -0.4315   -0.0941 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9492    0.8707    0.6175 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5626    1.0767    0.7353 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0786    2.1949    1.3378 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7332    0.0937    0.2098 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    0.2110    0.2833 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7538    0.9166    1.1339 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3925    0.4004   -1.8358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6890    0.8340   -1.9271 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5101    0.6298   -0.8408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0676    0.0154    0.3030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9607   -0.1812    1.4310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2266    0.2564    1.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7537    0.9193    0.1183 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.9414    0.1468   -0.4705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2995    2.3102    0.4380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2834    3.1729    0.8430 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8192    1.0611   -0.9153 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3590   -2.6904    2.2660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4830   -2.9766    0.6709 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3964   -2.8412    2.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7698   -0.8530   -2.7101 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5127   -2.7532   -1.1819 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0137   -2.2643    0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9723   -2.1147   -0.9935 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3734   -0.9051    0.6142 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6062    1.6265    1.0221 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1588    2.4669    1.4715 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2215    0.5816   -2.7163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1047    1.3232   -2.7932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6184   -0.6620    2.3331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8662    0.0956    2.1719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6365   -0.8765   -0.7448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2013    0.6963   -1.4085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8115    0.1978    0.1889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0946    2.2129    1.1985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7536    2.7391   -0.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2514    3.9803    0.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  1  6
 25 27  1  0
 27 28  1  0
 25 29  1  0
  4  5  1  0
  5  6  1  6
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  2  0
 22  3  1  0
 17  5  1  0
 29 21  1  0
 16  9  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
 19 40  1  0
 20 41  1  0
 23 42  1  0
 24 43  1  0
 26 44  1  0
 26 45  1  0
 26 46  1  0
 27 47  1  0
 27 48  1  0
 28 49  1  0
  6 33  1  0
  7 34  1  0
  7 35  1  0
 10 36  1  0
 12 37  1  0
 13 38  1  0
 15 39  1  0
M  END


  Mrv1652309062207392D          

 29 32  0  0  1  0            999 V2000
    3.4222   -0.7255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7077   -1.1380    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7077   -1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9933   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2788   -1.9630    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8091   -1.3310    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9966   -2.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1842   -2.8815    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3461   -2.2495    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1586   -2.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6889   -1.7608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5014   -1.9040    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4067   -0.9855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5943   -0.8423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3121   -0.0670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0640   -1.4743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7485   -1.3310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0307   -0.5558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9933   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7077   -3.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4222   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4222   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1367   -1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8512   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8512   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6636   -3.0572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1333   -3.9757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9458   -4.1190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1367   -3.6130    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 17 18  2  0  0  0  0
  4 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
  3 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 25 29  1  0  0  0  0
 21 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0226575

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(C=CC2=C1C=CC(C)(CO)O2)[C@]1(O)COC2=CC(O)=CC(O)=C2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C21H20O8/c1-20(9-22)6-5-12-15(29-20)4-3-13(18(12)27-2)21(26)10-28-16-8-11(23)7-14(24)17(16)19(21)25/h3-8,22-24,26H,9-10H2,1-2H3/t20?,21-/m1/s1

> <INCHI_KEY>
XVFVOIOTKHNXRQ-BPGUCPLFSA-N

> <FORMULA>
C21H20O8

> <MOLECULAR_WEIGHT>
400.383

> <EXACT_MASS>
400.115817604

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
40.363775612166535

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methyl-2H-chromen-6-yl]-3,4-dihydro-2H-1-benzopyran-4-one

> <JCHEM_LOGP>
2.1357479423333325

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.362896908663163

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.740649556856928

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0991184507718508

> <JCHEM_POLAR_SURFACE_AREA>
125.68

> <JCHEM_REFRACTIVITY>
103.3419

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3S)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2H-1-benzopyran-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       6.388  -1.354   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.054  -2.124   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       5.054  -3.664   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.721  -4.434   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.387  -3.664   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       3.377  -2.485   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       1.860  -5.111   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.344  -5.379   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -0.646  -4.199   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.163  -4.467   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.153  -3.287   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -4.669  -3.554   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.626  -1.840   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.109  -1.572   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -0.583  -0.125   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -0.119  -2.752   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.397  -2.485   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.924  -1.037   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.721  -5.974   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.054  -6.744   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.388  -5.974   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.388  -4.434   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.722  -3.664   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.055  -4.434   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.055  -5.974   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.572  -5.707   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.582  -7.421   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      11.099  -7.689   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       7.722  -6.744   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   22                                                  
CONECT    4    3    5   19                                                  
CONECT    5    4    6    7   17                                             
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    9   17                                                  
CONECT   17   16    5   18                                                  
CONECT   18   17                                                            
CONECT   19    4   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   29                                                  
CONECT   22   21    3   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27   29                                             
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27                                                            
CONECT   29   25   21                                                       
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₀O₈

Average Mass

400.3830 Da

Monoisotopic Mass

400.11582 Da

IUPAC Name

(3S)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methyl-2H-chromen-6-yl]-3,4-dihydro-2H-1-benzopyran-4-one

Traditional Name

(3S)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2H-1-benzopyran-4-one

CAS Registry Number

Not Available

SMILES

COC1=C(C=CC2=C1C=CC(C)(CO)O2)[C@]1(O)COC2=CC(O)=CC(O)=C2C1=O

InChI Identifier

InChI=1S/C21H20O8/c1-20(9-22)6-5-12-15(29-20)4-3-13(18(12)27-2)21(26)10-28-16-8-11(23)7-14(24)17(16)19(21)25/h3-8,22-24,26H,9-10H2,1-2H3/t20?,21-/m1/s1

InChI Key

XVFVOIOTKHNXRQ-BPGUCPLFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3'-prenylated isoflavanones. These are isoflavanones featuring a C5-isoprenoid unit at the 3'-position.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Isoflavans

Direct Parent

3'-prenylated isoflavanones

Alternative Parents

Substituents

3'-prenylated isoflavanone
Pyranoisoflavonoid
2p-methoxyisoflavonoid-skeleton
Isoflavanol
Hydroxyisoflavonoid
Chromone
Chromane
Benzopyran
1-benzopyran
Anisole
Aryl alkyl ketone
Aryl ketone
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
Benzenoid
Acyloin
Vinylogous acid
Tertiary alcohol
Ketone
Ether
Organoheterocyclic compound
Oxacycle
Polyol
Primary alcohol
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Alcohol
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.14	ChemAxon
pKa (Strongest Acidic)	7.74	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	103.34 m³·mol⁻¹	ChemAxon
Polarizability	40.36 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00048129

Chemspider ID

24619707

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44233683

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one (NP0226575)

MOL for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

3D MOL for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

3D SDF for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

3D-SDF for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

PDB for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

3D PDB for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

SMILES for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

INCHI for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

Structure for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)

3D Structure for NP0226575 ((3s)-3,5,7-trihydroxy-3-[2-(hydroxymethyl)-5-methoxy-2-methylchromen-6-yl]-2h-1-benzopyran-4-one)