NP-MRD: Showing NP-Card for 10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one (NP0226535)

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Record Information

Version

2.0

Created at

2022-09-06 05:36:38 UTC

Updated at

2022-09-06 05:36:38 UTC

NP-MRD ID

NP0226535

Secondary Accession Numbers

None

Natural Product Identification

Common Name

10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one

Description

10-Hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]Tetradec-7-en-13-one belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. 10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one is found in Inula salsoloides. 10-Hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]Tetradec-7-en-13-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004201502332D          

 20 22  0  0  0  0            999 V2000
    1.8324    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5793    0.0621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9297    0.8090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4581    1.4859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8085    2.2328    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6305    2.3028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9809    3.0497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5093    3.7266    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1021    1.6259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7517    0.8790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1278    0.3392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2234    0.2021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8730   -0.5448    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4750   -1.1089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1975   -0.7106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9444   -1.0610    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0420    0.0996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6060    0.7017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0509   -0.6148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2289   -0.6848    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  4  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 19  1  0  0  0  0
  2 19  1  0  0  0  0
 19 20  1  0  0  0  0
  2 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0226535

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC12CCC=C(CO)CC(O)C3C(OC(=O)C3=C)C1O2

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O5/c1-8-11-10(17)6-9(7-16)4-3-5-15(2)13(20-15)12(11)19-14(8)18/h4,10-13,16-17H,1,3,5-7H2,2H3

> <INCHI_KEY>
HHQXBESKXBXHGC-UHFFFAOYSA-N

> <FORMULA>
C15H20O5

> <MOLECULAR_WEIGHT>
280.32

> <EXACT_MASS>
280.131073744

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.32822007739186

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one

> <ALOGPS_LOGP>
0.34

> <JCHEM_LOGP>
0.44535964166666686

> <ALOGPS_LOGS>
-1.49

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.293539593751174

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.573722037789071

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7299594664421587

> <JCHEM_POLAR_SURFACE_AREA>
79.28999999999999

> <JCHEM_REFRACTIVITY>
71.8983

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.02e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-15         0                                  
HETATM    1  C   UNK     0       3.421   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.815   0.116   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.469   1.510   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.588   2.774   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.242   4.168   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.777   4.299   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.431   5.693   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.551   6.956   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       7.657   3.035   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.003   1.641   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.839   0.633   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.884   0.377   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.230  -1.017   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       8.353  -2.070   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       9.702  -1.326   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      11.096  -1.980   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.412   0.186   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.465   1.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.695  -1.148   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.161  -1.278   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   19   20                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   17                                                  
CONECT   13   12   14   19                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   12   18                                                  
CONECT   18   17                                                            
CONECT   19   13    2   20                                                  
CONECT   20   19    2                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₅

Average Mass

280.3200 Da

Monoisotopic Mass

280.13107 Da

IUPAC Name

10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one

Traditional Name

10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one

CAS Registry Number

Not Available

SMILES

CC12CCC=C(CO)CC(O)C3C(OC(=O)C3=C)C1O2

InChI Identifier

InChI=1S/C15H20O5/c1-8-11-10(17)6-9(7-16)4-3-5-15(2)13(20-15)12(11)19-14(8)18/h4,10-13,16-17H,1,3,5-7H2,2H3

InChI Key

HHQXBESKXBXHGC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Inula salsoloides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Germacranolides and derivatives

Alternative Parents

Substituents

Germacranolide
Germacrane sesquiterpenoid
Sesquiterpenoid
Gamma butyrolactone
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Carboxylic acid ester
Lactone
Secondary alcohol
Carboxylic acid derivative
Dialkyl ether
Oxirane
Ether
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Alcohol
Organic oxide
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organooxygen compound
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.34	ALOGPS
logP	0.45	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	14.57	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	79.29 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	71.9 m³·mol⁻¹	ChemAxon
Polarizability	28.33 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

75966821

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one (NP0226535)

MOL for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

3D MOL for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

3D SDF for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

3D-SDF for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

PDB for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

3D PDB for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

SMILES for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

INCHI for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

Structure for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)

3D Structure for NP0226535 (10-hydroxy-8-(hydroxymethyl)-4-methyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0²,⁴]tetradec-7-en-13-one)