NP-MRD: Showing NP-Card for (2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid (NP0226504)

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Record Information

Version

2.0

Created at

2022-09-06 05:33:46 UTC

Updated at

2022-09-06 05:33:46 UTC

NP-MRD ID

NP0226504

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid

Description

(2E,6R)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle. (2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid is found in Acacia concinna. Based on a literature review very few articles have been published on (2E,6R)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 41  0  0  0  0  0  0  0  0999 V2000
   -1.2256    1.2382   -2.6594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1533    0.0382   -2.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4868   -0.0561   -0.7627 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6698   -1.4423   -0.1992 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9506    0.3196   -0.9522 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7324    0.3372    0.3426 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1371    0.7077    0.1286 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1980   -0.0370    0.3613 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0933   -1.4043    0.8906 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6770   -2.3192   -0.0308 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5465    0.4571    0.1051 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6947    1.6059   -0.3425 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6293   -0.3364    0.3555 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1583    0.8257    0.0817 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5039    0.4695    0.1067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3130    1.3762    1.0014 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7498    0.8934    0.9476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8925   -0.5265    1.4212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8256    2.1348   -2.1978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6985    1.3933   -3.6349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5748   -0.8022   -2.6171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5857   -1.8627   -0.6650 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1562   -2.1256   -0.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8470   -1.3991    0.8841 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4704   -0.3826   -1.6326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9799    1.3161   -1.4362 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6039   -0.5106    0.9843 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2804    1.2297    0.9108 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3781    1.7121   -0.2703 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0451   -1.7132    0.9401 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6254   -1.4702    1.8611 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0200   -2.5824   -0.7045 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8720   -0.5020    1.3391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9438    0.4983   -0.9088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6656   -0.5681    0.4824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9810    1.2860    2.0539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3110    2.4273    0.6760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0965    0.9217   -0.1120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4352    1.5473    1.5218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8549   -1.2672    0.5750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9285   -0.6354    1.8394 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1894   -0.7921    2.2356 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
  3 14  1  1
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  8 11  1  0
 11 13  1  0
 11 12  2  0
  3  2  1  0
  2  1  2  3
 18 40  1  0
 18 41  1  0
 18 42  1  0
 17 38  1  0
 17 39  1  0
 16 36  1  0
 16 37  1  0
 15 34  1  0
 15 35  1  0
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  6 28  1  0
  7 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 13 33  1  0
  2 21  1  0
  1 19  1  0
  1 20  1  0
M  END


  Mrv1652309062207342D          

 18 17  0  0  1  0            999 V2000
    1.2375   -1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -1.3184    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3809   -0.9059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0789   -2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -2.7474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0789   -3.4618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039   -3.4618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3164   -2.7474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414   -2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3164   -4.1763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414   -4.1763    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039   -4.8908    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  3 14  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0226504

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCO[C@](C)(CC\C=C(/CO)C(O)=O)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C14H24O4/c1-4-6-10-18-14(3,5-2)9-7-8-12(11-15)13(16)17/h5,8,15H,2,4,6-7,9-11H2,1,3H3,(H,16,17)/b12-8+/t14-/m0/s1

> <INCHI_KEY>
HDLIFVHZADXCSA-BCNIOPEESA-N

> <FORMULA>
C14H24O4

> <MOLECULAR_WEIGHT>
256.342

> <EXACT_MASS>
256.167459253

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
29.049522378113686

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,6R)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid

> <JCHEM_LOGP>
2.5254394133333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.237430676744822

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.596037879019108

> <JCHEM_PKA_STRONGEST_BASIC>
-2.848288696828882

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
72.32330000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E,6R)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       2.310  -2.461   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.644  -3.231   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.977  -2.461   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.311  -1.691   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.747  -3.795   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.977  -5.128   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.747  -6.462   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.287  -6.462   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.057  -5.128   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       9.597  -5.128   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       8.057  -7.796   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       9.597  -7.796   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       7.287  -9.129   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       4.207  -1.127   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.977   0.206   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.207   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.977   2.874   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.207   4.207   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   14                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    3   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol

Synonyms

Value	Source
(2E,6R)-6-Butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoate	Generator

Chemical Formula

C₁₄H₂₄O₄

Average Mass

256.3420 Da

Monoisotopic Mass

256.16746 Da

IUPAC Name

(2E,6R)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid

Traditional Name

(2E,6R)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid

CAS Registry Number

Not Available

SMILES

CCCCO[C@](C)(CC\C=C(/CO)C(O)=O)C=C

InChI Identifier

InChI=1S/C14H24O4/c1-4-6-10-18-14(3,5-2)9-7-8-12(11-15)13(16)17/h5,8,15H,2,4,6-7,9-11H2,1,3H3,(H,16,17)/b12-8+/t14-/m0/s1

InChI Key

HDLIFVHZADXCSA-BCNIOPEESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Acacia concinna	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Acyclic monoterpenoids

Alternative Parents

Substituents

Acyclic monoterpenoid
Medium-chain fatty acid
Beta-hydroxy acid
Branched fatty acid
Hydroxy fatty acid
Methyl-branched fatty acid
Fatty acyl
Unsaturated fatty acid
Fatty acid
Hydroxy acid
Carboxylic acid derivative
Carboxylic acid
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Organic oxide
Hydrocarbon derivative
Carbonyl group
Primary alcohol
Organic oxygen compound
Organooxygen compound
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.53	ChemAxon
pKa (Strongest Acidic)	4.6	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	72.32 m³·mol⁻¹	ChemAxon
Polarizability	29.05 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163010939

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid (NP0226504)

MOL for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

3D MOL for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

3D SDF for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

3D-SDF for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

PDB for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

3D PDB for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

SMILES for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

INCHI for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

Structure for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)

3D Structure for NP0226504 ((2e,6r)-6-butoxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoic acid)