NP-MRD: Showing NP-Card for 2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid (NP0226123)

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Record Information

Version

2.0

Created at

2022-09-06 05:04:15 UTC

Updated at

2022-09-06 05:04:16 UTC

NP-MRD ID

NP0226123

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid

Description

2-({1-Hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. 2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid is found in Streptacidiphilus rugosus. Based on a literature review very few articles have been published on 2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062207042D          

 34 34  0  0  0  0            999 V2000
    0.6039   -9.2368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6336   -7.0934    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0461   -6.3789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309062207042D          

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 18  9  1  4  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
  5 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  2  0  0  0  0
 27 28  1  4  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 28 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0226123

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)C(N=C(O)C(CC1=CC=C(O)C=C1)N=C(O)CC(C)C)C(O)=NC(CO)CCSC

> <INCHI_IDENTIFIER>
InChI=1S/C25H41N3O5S/c1-6-17(4)23(25(33)26-19(15-29)11-12-34-5)28-24(32)21(27-22(31)13-16(2)3)14-18-7-9-20(30)10-8-18/h7-10,16-17,19,21,23,29-30H,6,11-15H2,1-5H3,(H,26,33)(H,27,31)(H,28,32)

> <INCHI_KEY>
HIXISXYUWMIRCH-UHFFFAOYSA-N

> <FORMULA>
C25H41N3O5S

> <MOLECULAR_WEIGHT>
495.68

> <EXACT_MASS>
495.276692606

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
55.14370314919324

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid

> <JCHEM_LOGP>
4.321207776255119

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.9082929553162904

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.537516729933454

> <JCHEM_PKA_STRONGEST_BASIC>
4.602569229329978

> <JCHEM_POLAR_SURFACE_AREA>
138.23000000000002

> <JCHEM_REFRACTIVITY>
137.2953

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       1.127 -17.242   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.357 -15.908   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.127 -14.575   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667 -14.575   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.357 -13.241   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      -1.183 -13.241   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      -1.953 -11.907   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.183 -10.574   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -3.493 -11.907   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.263 -10.574   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.803 -10.574   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -6.573 -11.907   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -8.113 -11.907   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -8.883 -10.574   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0     -10.423 -10.574   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -8.113  -9.240   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.573  -9.240   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0      -4.263 -13.241   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0      -3.493 -14.575   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -1.953 -14.575   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.263 -15.908   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.803 -15.908   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -6.573 -17.242   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -6.573 -14.575   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.127 -11.907   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       0.357 -10.574   0.000  0.00  0.00           O+0
HETATM   27  N   UNK     0       2.667 -11.907   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0       3.437 -10.574   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       3.437  -7.906   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       4.977 -10.574   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       5.747  -9.240   0.000  0.00  0.00           C+0
HETATM   33  S   UNK     0       7.287  -9.240   0.000  0.00  0.00           S+0
HETATM   34  C   UNK     0       8.057  -7.906   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   25                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   18                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   11                                                       
CONECT   18    9   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25    5   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   31                                                  
CONECT   29   28   30                                                       
CONECT   30   29                                                            
CONECT   31   28   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   68    0
END

View in JSmol

Synonyms

Value	Source
2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidate	Generator
2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulphanyl)butan-2-yl]-3-methylpentanimidate	Generator
2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulphanyl)butan-2-yl]-3-methylpentanimidic acid	Generator

Chemical Formula

C₂₅H₄₁N₃O₅S

Average Mass

495.6800 Da

Monoisotopic Mass

495.27669 Da

IUPAC Name

2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid

Traditional Name

2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-N-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid

CAS Registry Number

Not Available

SMILES

CCC(C)C(N=C(O)C(CC1=CC=C(O)C=C1)N=C(O)CC(C)C)C(O)=NC(CO)CCSC

InChI Identifier

InChI=1S/C25H41N3O5S/c1-6-17(4)23(25(33)26-19(15-29)11-12-34-5)28-24(32)21(27-22(31)13-16(2)3)14-18-7-9-20(30)10-8-18/h7-10,16-17,19,21,23,29-30H,6,11-15H2,1-5H3,(H,26,33)(H,27,31)(H,28,32)

InChI Key

HIXISXYUWMIRCH-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptacidiphilus rugosus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Tyrosine or derivatives
Phenylalanine or derivatives
Isoleucine or derivatives
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Amphetamine or derivatives
Alpha-amino acid or derivatives
N-substituted-alpha-amino acid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Fatty acyl
Benzenoid
N-acyl-amine
Fatty amide
Monocyclic benzene moiety
Secondary carboxylic acid amide
Carboxamide group
Dialkylthioether
Sulfenyl compound
Thioether
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organosulfur compound
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.32	ChemAxon
pKa (Strongest Acidic)	2.54	ChemAxon
pKa (Strongest Basic)	4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	138.23 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	137.3 m³·mol⁻¹	ChemAxon
Polarizability	55.14 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162814362

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid (NP0226123)

MOL for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

3D MOL for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

3D SDF for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

3D-SDF for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

PDB for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

3D PDB for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

SMILES for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

INCHI for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

Structure for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)

3D Structure for NP0226123 (2-({1-hydroxy-2-[(1-hydroxy-3-methylbutylidene)amino]-3-(4-hydroxyphenyl)propylidene}amino)-n-[1-hydroxy-4-(methylsulfanyl)butan-2-yl]-3-methylpentanimidic acid)