NP-MRD: Showing NP-Card for (2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid (NP0225736)

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Record Information

Version

2.0

Created at

2022-09-06 04:32:45 UTC

Updated at

2022-09-06 04:32:46 UTC

NP-MRD ID

NP0225736

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid

Description

(2R,11bR)-2-hydroxy-1H,2H,3H,5H,6H,11H,11bH-indolo[3,2-g]indolizine-2-carboxylic acid belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety. Based on a literature review very few articles have been published on (2R,11bR)-2-hydroxy-1H,2H,3H,5H,6H,11H,11bH-indolo[3,2-g]indolizine-2-carboxylic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 39  0  0  0  0  0  0  0  0999 V2000
   -5.0784   -1.2168   -1.3342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9612   -0.7130   -1.0729 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6582    0.4984   -1.6769 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9852   -1.3729   -0.1537 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5050   -2.5544    0.3195 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6360   -1.5728   -0.8392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9695   -0.2912   -0.5230 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4901   -0.2814   -0.5804 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4956   -1.0608   -1.0187 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6731   -0.4604   -0.7643 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0016   -0.8014   -0.9940 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0310    0.0318   -0.6151 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7293    1.2375    0.0095 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4413    1.6080    0.2524 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4344    0.7487   -0.1407 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0641    0.8486   -0.0316 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1501    1.8850    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9416    1.2176    1.3434 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3373   -0.0552    0.8577 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7150   -0.3729    0.9734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7076    1.3638   -1.1532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8323   -3.0419    0.8375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1642   -2.4731   -0.4517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8725   -1.6562   -1.9404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3581    0.4922   -1.2027 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3584   -2.0055   -1.4922 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1987   -1.7402   -1.4786 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0828   -0.2284   -0.7919 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5372    1.8807    0.3014 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1542    2.5461    0.7405 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7176    2.5595    1.2057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2970    2.4269   -0.3348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8248    1.8729    1.4653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5178    1.0763    2.3773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3413    0.5202    0.8987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8565   -0.9156    1.9535 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
  2  1  2  0
  2  4  1  0
  4  5  1  1
  4  6  1  0
  6  7  1  0
  7 19  1  0
 19 20  1  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 20  4  1  0
 15 16  1  0
  8  7  1  0
 15 10  1  0
  3 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  6
 20 35  1  0
 20 36  1  0
 18 33  1  0
 18 34  1  0
 17 31  1  0
 17 32  1  0
  9 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 14 30  1  0
M  END


  Mrv1652309062206322D          

 20 23  0  0  1  0            999 V2000
    2.2836   -0.7593    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7554   -1.3930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9425   -1.2526    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0402   -2.1673    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2404   -2.3696    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7805   -1.8031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3556   -2.3946    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1800   -2.3630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7081   -1.7292    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4741   -2.0357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2144   -1.6715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8999   -2.1305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8452   -2.9537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1049   -3.3179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4194   -2.8589    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6196   -3.0612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2347   -3.7909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4103   -3.8225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9708   -3.1244    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1578   -2.9839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
  8 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  7 19  1  6  0  0  0
 19 20  1  0  0  0  0
  4 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0225736

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(=O)[C@@]1(O)C[C@H]2N(C1)CCC1=C2NC2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C15H16N2O3/c18-14(19)15(20)7-12-13-10(5-6-17(12)8-15)9-3-1-2-4-11(9)16-13/h1-4,12,16,20H,5-8H2,(H,18,19)/t12-,15-/m1/s1

> <INCHI_KEY>
HLLVTIBIXISEMQ-IUODEOHRSA-N

> <FORMULA>
C15H16N2O3

> <MOLECULAR_WEIGHT>
272.304

> <EXACT_MASS>
272.116092383

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
28.587284516261466

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,11bR)-2-hydroxy-1H,2H,3H,5H,6H,11H,11bH-indolo[3,2-g]indolizine-2-carboxylic acid

> <JCHEM_LOGP>
-1.7207968791511674

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.465453252474695

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.0741513830904488

> <JCHEM_PKA_STRONGEST_BASIC>
7.853513418017244

> <JCHEM_POLAR_SURFACE_AREA>
76.55999999999999

> <JCHEM_REFRACTIVITY>
73.52780000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,11bR)-2-hydroxy-1H,3H,5H,6H,11H,11bH-indolo[3,2-g]indolizine-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  O   UNK     0       4.263  -1.417   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       3.277  -2.600   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       1.759  -2.338   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       3.808  -4.046   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.315  -4.423   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       5.190  -3.366   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.264  -4.470   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.803  -4.411   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       8.789  -3.228   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      10.218  -3.800   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.600  -3.120   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.880  -3.977   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      12.778  -5.514   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.396  -6.193   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.116  -5.337   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.623  -5.714   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.905  -7.076   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.366  -7.135   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0       5.545  -5.832   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0       4.028  -5.570   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    6   20                                             
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8   19                                                  
CONECT    8    7    9   16                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   10   16                                                  
CONECT   16   15    8   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18    7   20                                                  
CONECT   20   19    4                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   46    0
END

View in JSmol

Synonyms

Value	Source
(2R,11BR)-2-Hydroxy-1H,2H,3H,5H,6H,11H,11BH-indolo[3,2-g]indolizine-2-carboxylate	Generator

Chemical Formula

C₁₅H₁₆N₂O₃

Average Mass

272.3040 Da

Monoisotopic Mass

272.11609 Da

IUPAC Name

(2R,11bR)-2-hydroxy-1H,2H,3H,5H,6H,11H,11bH-indolo[3,2-g]indolizine-2-carboxylic acid

Traditional Name

(2R,11bR)-2-hydroxy-1H,3H,5H,6H,11H,11bH-indolo[3,2-g]indolizine-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

OC(=O)[C@@]1(O)C[C@H]2N(C1)CCC1=C2NC2=CC=CC=C12

InChI Identifier

InChI=1S/C15H16N2O3/c18-14(19)15(20)7-12-13-10(5-6-17(12)8-15)9-3-1-2-4-11(9)16-13/h1-4,12,16,20H,5-8H2,(H,18,19)/t12-,15-/m1/s1

InChI Key

HLLVTIBIXISEMQ-IUODEOHRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Pyridoindoles

Direct Parent

Beta carbolines

Alternative Parents

Substituents

Beta-carboline
3-alkylindole
Indole
Pyrrolidine carboxylic acid
Pyrrolidine carboxylic acid or derivatives
Aralkylamine
Alpha-hydroxy acid
Benzenoid
N-alkylpyrrolidine
Hydroxy acid
Heteroaromatic compound
Tertiary alcohol
Pyrrolidine
Pyrrole
Amino acid
Tertiary aliphatic amine
Tertiary amine
Amino acid or derivatives
Azacycle
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Organopnictogen compound
Carbonyl group
Organic nitrogen compound
Organic oxide
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.7	ChemAxon
pKa (Strongest Acidic)	3.07	ChemAxon
pKa (Strongest Basic)	7.85	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	76.56 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	73.53 m³·mol⁻¹	ChemAxon
Polarizability	28.59 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163190256

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid (NP0225736)

MOL for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

3D MOL for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

3D SDF for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

3D-SDF for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

PDB for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

3D PDB for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

SMILES for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

INCHI for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

Structure for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)

3D Structure for NP0225736 ((2r,11br)-2-hydroxy-1h,3h,5h,6h,11h,11bh-indolo[3,2-g]indolizine-2-carboxylic acid)