NP-MRD: Showing NP-Card for (1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione (NP0225650)

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Record Information

Version

2.0

Created at

2022-09-06 04:26:12 UTC

Updated at

2022-09-06 04:26:12 UTC

NP-MRD ID

NP0225650

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione

Description

(1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione is found in Sinularia flexibilis.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306212101023D          

 53 55  0  0  0  0            999 V2000
    0.8542   -3.7269    3.4448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3838   -2.6994    2.7596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433   -2.9632    1.9907 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2396   -4.0277    1.9708 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9986   -1.9005    1.2287 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6891   -0.8016    1.8608 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1890   -1.1176    1.8212 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2373   -0.5440    3.3172 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7246   -0.3267    3.4898 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8262   -1.2935    2.6867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6643   -1.1355    3.0752 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1789    0.2062    2.6500 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5130    0.2662    2.1458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4680    0.5298    1.1854 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4282   -0.5088    0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3330    1.9693    0.7473 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0022    2.5976    1.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1036    2.7610    0.3233 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4583    2.3513   -1.0868 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4865    3.6068   -1.9733 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4865    1.4533   -1.6120 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8341    1.6437   -1.1819 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9599    0.3274   -0.4013 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4748    0.4879    1.0250 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7683    1.5948    1.4865 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3182   -4.7113    3.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0517   -3.6280    4.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7878   -0.2968    2.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5219   -1.2980    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4158   -2.0271    2.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7619    0.3246    3.7359 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5344   -1.3928    3.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4924    0.7045    3.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4902   -0.3999    4.5599 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8772   -0.9896    1.6352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7908   -1.2369    4.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -1.9313    2.6160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8801    0.9977    3.3257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4126   -0.6297   -0.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7735   -1.4874    0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0762   -0.2187   -0.7313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5638    2.0711   -0.3170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1051    2.5707    1.2467 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0405    3.0120    2.0807 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9184    3.2990    0.8168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5192    4.1237   -1.9587 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6762    3.3402   -3.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2570    4.3162   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2463    1.9871   -1.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6389    2.3352   -0.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9982    1.3900   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6914   -0.3051   -0.9188 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0055   -0.2045   -0.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  2  0  0  0  0
  6 24  1  0  0  0  0
 24 23  1  0  0  0  0
 19 18  1  0  0  0  0
 17 16  1  0  0  0  0
 16 14  1  0  0  0  0
  8  6  1  0  0  0  0
 24 25  2  0  0  0  0
 23 22  1  0  0  0  0
 10  2  1  0  0  0  0
 22 19  1  0  0  0  0
  6  5  1  0  0  0  0
 12 11  1  0  0  0  0
  2  3  1  0  0  0  0
 11 10  1  0  0  0  0
  2  1  2  3  0  0  0
  3  5  1  0  0  0  0
 10  9  1  0  0  0  0
  3  4  2  0  0  0  0
  9  8  1  0  0  0  0
 19 20  1  0  0  0  0
 14 12  1  0  0  0  0
 12 38  1  1  0  0  0
 13 14  1  0  0  0  0
  6  7  1  1  0  0  0
 12 13  1  0  0  0  0
 14 15  1  6  0  0  0
 19 21  1  6  0  0  0
 23 52  1  0  0  0  0
 23 53  1  0  0  0  0
 22 50  1  0  0  0  0
 22 51  1  0  0  0  0
 17 44  1  0  0  0  0
 16 42  1  0  0  0  0
 16 43  1  0  0  0  0
 11 36  1  0  0  0  0
 11 37  1  0  0  0  0
 10 35  1  6  0  0  0
  9 33  1  0  0  0  0
  9 34  1  0  0  0  0
  8 31  1  0  0  0  0
  8 32  1  0  0  0  0
 18 45  1  0  0  0  0
 21 49  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
 20 46  1  0  0  0  0
 20 47  1  0  0  0  0
 20 48  1  0  0  0  0
  7 28  1  0  0  0  0
  7 29  1  0  0  0  0
  7 30  1  0  0  0  0
 15 39  1  0  0  0  0
 15 40  1  0  0  0  0
 15 41  1  0  0  0  0
M  END

     RDKit          3D

 53 55  0  0  0  0  0  0  0  0999 V2000
    0.8542   -3.7269    3.4448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3838   -2.6994    2.7596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433   -2.9632    1.9907 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2396   -4.0277    1.9708 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9986   -1.9005    1.2287 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6891   -0.8016    1.8608 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1890   -1.1176    1.8212 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2373   -0.5440    3.3172 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7246   -0.3267    3.4898 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8262   -1.2935    2.6867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6643   -1.1355    3.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1789    0.2062    2.6500 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5130    0.2662    2.1458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4680    0.5298    1.1854 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4282   -0.5088    0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3330    1.9693    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0022    2.5976    1.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1036    2.7610    0.3233 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4583    2.3513   -1.0868 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4865    3.6068   -1.9733 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4865    1.4533   -1.6120 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8341    1.6437   -1.1819 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9599    0.3274   -0.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4748    0.4879    1.0250 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7683    1.5948    1.4865 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3182   -4.7113    3.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0517   -3.6280    4.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7878   -0.2968    2.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5219   -1.2980    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4158   -2.0271    2.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7619    0.3246    3.7359 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5344   -1.3928    3.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4924    0.7045    3.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4902   -0.3999    4.5599 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8772   -0.9896    1.6352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7908   -1.2369    4.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -1.9313    2.6160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8801    0.9977    3.3257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4126   -0.6297   -0.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7735   -1.4874    0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0762   -0.2187   -0.7313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5638    2.0711   -0.3170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1051    2.5707    1.2467 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0405    3.0120    2.0807 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9184    3.2990    0.8168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5192    4.1237   -1.9587 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6762    3.3402   -3.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2570    4.3162   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2463    1.9871   -1.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6389    2.3352   -0.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9982    1.3900   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6914   -0.3051   -0.9188 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0055   -0.2045   -0.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  2  0
  6 24  1  0
 24 23  1  0
 19 18  1  0
 17 16  1  0
 16 14  1  0
  8  6  1  0
 24 25  2  0
 23 22  1  0
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 22 19  1  0
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  2  3  1  0
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  2  1  2  3
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  3  4  2  0
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 14 12  1  0
 12 38  1  1
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 12 13  1  0
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  1 26  1  0
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  7 28  1  0
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 15 39  1  0
 15 40  1  0
 15 41  1  0
M  END


  Mrv1652306212101023D          

 53 55  0  0  0  0            999 V2000
    0.8542   -3.7269    3.4448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3838   -2.6994    2.7596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433   -2.9632    1.9907 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2396   -4.0277    1.9708 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9986   -1.9005    1.2287 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6891   -0.8016    1.8608 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1890   -1.1176    1.8212 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2373   -0.5440    3.3172 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7246   -0.3267    3.4898 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8262   -1.2935    2.6867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6643   -1.1355    3.0752 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1789    0.2062    2.6500 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5130    0.2662    2.1458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4680    0.5298    1.1854 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4282   -0.5088    0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3330    1.9693    0.7473 C   0  0  1  0  0  0  0  0  0  0  0  0
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    1.1036    2.7610    0.3233 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4583    2.3513   -1.0868 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4865    3.6068   -1.9733 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4865    1.4533   -1.6120 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8341    1.6437   -1.1819 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9599    0.3274   -0.4013 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4748    0.4879    1.0250 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7683    1.5948    1.4865 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3182   -4.7113    3.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0517   -3.6280    4.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7878   -0.2968    2.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5219   -1.2980    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4158   -2.0271    2.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7619    0.3246    3.7359 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5344   -1.3928    3.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4924    0.7045    3.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4902   -0.3999    4.5599 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8772   -0.9896    1.6352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7908   -1.2369    4.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -1.9313    2.6160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8801    0.9977    3.3257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4126   -0.6297   -0.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7735   -1.4874    0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0762   -0.2187   -0.7313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5638    2.0711   -0.3170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1051    2.5707    1.2467 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0405    3.0120    2.0807 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9184    3.2990    0.8168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5192    4.1237   -1.9587 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6762    3.3402   -3.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2570    4.3162   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2463    1.9871   -1.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6389    2.3352   -0.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9982    1.3900   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6914   -0.3051   -0.9188 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0055   -0.2045   -0.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  2  0  0  0  0
  6 24  1  0  0  0  0
 24 23  1  0  0  0  0
 19 18  1  0  0  0  0
 17 16  1  0  0  0  0
 16 14  1  0  0  0  0
  8  6  1  0  0  0  0
 24 25  2  0  0  0  0
 23 22  1  0  0  0  0
 10  2  1  0  0  0  0
 22 19  1  0  0  0  0
  6  5  1  0  0  0  0
 12 11  1  0  0  0  0
  2  3  1  0  0  0  0
 11 10  1  0  0  0  0
  2  1  2  3  0  0  0
  3  5  1  0  0  0  0
 10  9  1  0  0  0  0
  3  4  2  0  0  0  0
  9  8  1  0  0  0  0
 19 20  1  0  0  0  0
 14 12  1  0  0  0  0
 12 38  1  1  0  0  0
 13 14  1  0  0  0  0
  6  7  1  1  0  0  0
 12 13  1  0  0  0  0
 14 15  1  6  0  0  0
 19 21  1  6  0  0  0
 23 52  1  0  0  0  0
 23 53  1  0  0  0  0
 22 50  1  0  0  0  0
 22 51  1  0  0  0  0
 17 44  1  0  0  0  0
 16 42  1  0  0  0  0
 16 43  1  0  0  0  0
 11 36  1  0  0  0  0
 11 37  1  0  0  0  0
 10 35  1  6  0  0  0
  9 33  1  0  0  0  0
  9 34  1  0  0  0  0
  8 31  1  0  0  0  0
  8 32  1  0  0  0  0
 18 45  1  0  0  0  0
 21 49  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
 20 46  1  0  0  0  0
 20 47  1  0  0  0  0
 20 48  1  0  0  0  0
  7 28  1  0  0  0  0
  7 29  1  0  0  0  0
  7 30  1  0  0  0  0
 15 39  1  0  0  0  0
 15 40  1  0  0  0  0
 15 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0225650

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1(\C([H])=C([H])/C([H])([H])[C@@]2(O[C@@]2([H])C([H])([H])[C@]2([H])C(=C([H])[H])C(=O)O[C@](C(=O)C([H])([H])C1([H])[H])(C([H])([H])[H])C([H])([H])C2([H])[H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H28O5/c1-13-14-6-11-19(3,25-17(13)22)15(21)7-10-18(2,23)8-5-9-20(4)16(12-14)24-20/h5,8,14,16,23H,1,6-7,9-12H2,2-4H3/b8-5-/t14-,16+,18+,19-,20+/m1/s1

> <INCHI_KEY>
JPQQAPXCMFCLBZ-HMXCFEIASA-N

> <FORMULA>
C20H28O5

> <MOLECULAR_WEIGHT>
348.439

> <EXACT_MASS>
348.193674002

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
36.88794336902439

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3S,5S,7Z,9R,13R)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0^{3,5}]octadec-7-ene-12,15-dione

> <ALOGPS_LOGP>
2.20

> <JCHEM_LOGP>
3.0354037050000016

> <ALOGPS_LOGS>
-4.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.61972683435052

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.653585899872546

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9398715145364083

> <JCHEM_POLAR_SURFACE_AREA>
76.13

> <JCHEM_REFRACTIVITY>
94.39099999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.31e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,5S,7Z,9R,13R)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0^{3,5}]octadec-7-ene-12,15-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 53 55  0  0  0  0  0  0  0  0999 V2000
    0.8542   -3.7269    3.4448 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3838   -2.6994    2.7596 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6433   -2.9632    1.9907 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2396   -4.0277    1.9708 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9986   -1.9005    1.2287 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6891   -0.8016    1.8608 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1890   -1.1176    1.8212 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2373   -0.5440    3.3172 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7246   -0.3267    3.4898 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8262   -1.2935    2.6867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6643   -1.1355    3.0752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1789    0.2062    2.6500 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5130    0.2662    2.1458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4680    0.5298    1.1854 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4282   -0.5088    0.1025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3330    1.9693    0.7473 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0022    2.5976    1.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1036    2.7610    0.3233 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4583    2.3513   -1.0868 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4865    3.6068   -1.9733 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4865    1.4533   -1.6120 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8341    1.6437   -1.1819 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9599    0.3274   -0.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4748    0.4879    1.0250 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7683    1.5948    1.4865 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3182   -4.7113    3.4410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0517   -3.6280    4.0326 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7878   -0.2968    2.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5219   -1.2980    0.7923 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4158   -2.0271    2.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7619    0.3246    3.7359 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5344   -1.3928    3.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4924    0.7045    3.1982 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4902   -0.3999    4.5599 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8772   -0.9896    1.6352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7908   -1.2369    4.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2624   -1.9313    2.6160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8801    0.9977    3.3257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4126   -0.6297   -0.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7735   -1.4874    0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0762   -0.2187   -0.7313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5638    2.0711   -0.3170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1051    2.5707    1.2467 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0405    3.0120    2.0807 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9184    3.2990    0.8168 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5192    4.1237   -1.9587 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6762    3.3402   -3.0196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2570    4.3162   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2463    1.9871   -1.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6389    2.3352   -0.9027 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9982    1.3900   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6914   -0.3051   -0.9188 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0055   -0.2045   -0.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  2  0
  6 24  1  0
 24 23  1  0
 19 18  1  0
 17 16  1  0
 16 14  1  0
  8  6  1  0
 24 25  2  0
 23 22  1  0
 10  2  1  0
 22 19  1  0
  6  5  1  0
 12 11  1  0
  2  3  1  0
 11 10  1  0
  2  1  2  3
  3  5  1  0
 10  9  1  0
  3  4  2  0
  9  8  1  0
 19 20  1  0
 14 12  1  0
 12 38  1  1
 13 14  1  0
  6  7  1  1
 12 13  1  0
 14 15  1  6
 19 21  1  6
 23 52  1  0
 23 53  1  0
 22 50  1  0
 22 51  1  0
 17 44  1  0
 16 42  1  0
 16 43  1  0
 11 36  1  0
 11 37  1  0
 10 35  1  6
  9 33  1  0
  9 34  1  0
  8 31  1  0
  8 32  1  0
 18 45  1  0
 21 49  1  0
  1 26  1  0
  1 27  1  0
 20 46  1  0
 20 47  1  0
 20 48  1  0
  7 28  1  0
  7 29  1  0
  7 30  1  0
 15 39  1  0
 15 40  1  0
 15 41  1  0
M  END

HEADER    PROTEIN                                 21-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUN-21         0                                  
HETATM    1  C   UNK     0       0.854  -3.727   3.445  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.384  -2.699   2.760  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.643  -2.963   1.991  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.240  -4.028   1.971  0.00  0.00           O+0
HETATM    5  O   UNK     0       2.999  -1.901   1.229  0.00  0.00           O+0
HETATM    6  C   UNK     0       3.689  -0.802   1.861  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.189  -1.118   1.821  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.237  -0.544   3.317  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.725  -0.327   3.490  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.826  -1.294   2.687  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.664  -1.135   3.075  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.179   0.206   2.650  0.00  0.00           C+0
HETATM   13  O   UNK     0      -2.513   0.266   2.146  0.00  0.00           O+0
HETATM   14  C   UNK     0      -1.468   0.530   1.185  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.428  -0.509   0.103  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.333   1.969   0.747  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.002   2.598   1.072  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.104   2.761   0.323  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.458   2.351  -1.087  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.486   3.607  -1.973  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.487   1.453  -1.612  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.834   1.644  -1.182  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.960   0.327  -0.401  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.475   0.488   1.025  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.768   1.595   1.486  0.00  0.00           O+0
HETATM   26  H   UNK     0       1.318  -4.711   3.441  0.00  0.00           H+0
HETATM   27  H   UNK     0      -0.052  -3.628   4.033  0.00  0.00           H+0
HETATM   28  H   UNK     0       5.788  -0.297   2.230  0.00  0.00           H+0
HETATM   29  H   UNK     0       5.522  -1.298   0.792  0.00  0.00           H+0
HETATM   30  H   UNK     0       5.416  -2.027   2.388  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.762   0.325   3.736  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.534  -1.393   3.948  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.492   0.705   3.198  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.490  -0.400   4.560  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.877  -0.990   1.635  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.791  -1.237   4.160  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.262  -1.931   2.616  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.880   0.998   3.326  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.413  -0.630  -0.281  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.774  -1.487   0.450  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.076  -0.219  -0.731  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.564   2.071  -0.317  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.105   2.571   1.247  0.00  0.00           H+0
HETATM   44  H   UNK     0       0.041   3.012   2.081  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.918   3.299   0.817  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.519   4.124  -1.959  0.00  0.00           H+0
HETATM   47  H   UNK     0       1.676   3.340  -3.020  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.257   4.316  -1.652  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.246   1.987  -1.961  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.639   2.335  -0.903  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.998   1.390  -2.239  0.00  0.00           H+0
HETATM   52  H   UNK     0       3.691  -0.305  -0.919  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.006  -0.205  -0.382  0.00  0.00           H+0
CONECT    1    2   26   27                                                  
CONECT    2   10    3    1                                                  
CONECT    3    2    5    4                                                  
CONECT    4    3                                                            
CONECT    5    6    3                                                       
CONECT    6   24    8    5    7                                             
CONECT    7    6   28   29   30                                             
CONECT    8    6    9   31   32                                             
CONECT    9   10    8   33   34                                             
CONECT   10    2   11    9   35                                             
CONECT   11   12   10   36   37                                             
CONECT   12   11   14   38   13                                             
CONECT   13   14   12                                                       
CONECT   14   16   12   13   15                                             
CONECT   15   14   39   40   41                                             
CONECT   16   17   14   42   43                                             
CONECT   17   18   16   44                                                  
CONECT   18   17   19   45                                                  
CONECT   19   18   22   20   21                                             
CONECT   20   19   46   47   48                                             
CONECT   21   19   49                                                       
CONECT   22   23   19   50   51                                             
CONECT   23   24   22   52   53                                             
CONECT   24    6   23   25                                                  
CONECT   25   24                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    7                                                            
CONECT   29    7                                                            
CONECT   30    7                                                            
CONECT   31    8                                                            
CONECT   32    8                                                            
CONECT   33    9                                                            
CONECT   34    9                                                            
CONECT   35   10                                                            
CONECT   36   11                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   15                                                            
CONECT   40   15                                                            
CONECT   41   15                                                            
CONECT   42   16                                                            
CONECT   43   16                                                            
CONECT   44   17                                                            
CONECT   45   18                                                            
CONECT   46   20                                                            
CONECT   47   20                                                            
CONECT   48   20                                                            
CONECT   49   21                                                            
CONECT   50   22                                                            
CONECT   51   22                                                            
CONECT   52   23                                                            
CONECT   53   23                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  110    0
END

RDKit          3D

53 55  0  0  0  0  0  0  0  0999 V2000
    0.8542   -3.7269    3.4448 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₈O₅

Average Mass

348.4390 Da

Monoisotopic Mass

348.19367 Da

IUPAC Name

(1R,3S,5S,7Z,9R,13R)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0^{3,5}]octadec-7-ene-12,15-dione

Traditional Name

(1R,3S,5S,7Z,9R,13R)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0^{3,5}]octadec-7-ene-12,15-dione

CAS Registry Number

Not Available

SMILES

[H]O[C@]1(\C([H])=C([H])/C([H])([H])[C@@]2(O[C@@]2([H])C([H])([H])[C@]2([H])C(=C([H])[H])C(=O)O[C@](C(=O)C([H])([H])C1([H])[H])(C([H])([H])[H])C([H])([H])C2([H])[H])C([H])([H])[H])C([H])([H])[H]

InChI Identifier

InChI=1S/C20H28O5/c1-13-14-6-11-19(3,25-17(13)22)15(21)7-10-18(2,23)8-5-9-20(4)16(12-14)24-20/h5,8,14,16,23H,1,6-7,9-12H2,2-4H3/b8-5-/t14-,16+,18+,19-,20+/m1/s1

InChI Key

JPQQAPXCMFCLBZ-HMXCFEIASA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, CDCl₃, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sinularia flexibilis	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.2	ALOGPS
logP	3.04	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	14.65	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	76.13 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	94.39 m³·mol⁻¹	ChemAxon
Polarizability	36.89 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione (NP0225650)

MOL for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

3D MOL for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

3D SDF for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

3D-SDF for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

PDB for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

3D PDB for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

SMILES for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

INCHI for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

Structure for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)

3D Structure for NP0225650 ((1r,3s,5s,7e,9r,13r)-9-hydroxy-5,9,13-trimethyl-16-methylidene-4,14-dioxatricyclo[11.3.2.0³,⁵]octadec-7-ene-12,15-dione)