NP-MRD: Showing NP-Card for (1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione (NP0225071)

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Record Information

Version

2.0

Created at

2022-09-06 03:40:55 UTC

Updated at

2022-09-06 03:40:55 UTC

NP-MRD ID

NP0225071

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione

Description

Pamamycin 649B belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. (1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione is found in Streptomyces alboniger. (1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione was first documented in 2011 (PMID: 22012748). Based on a literature review very few articles have been published on Pamamycin 649B.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309062205402D          

 46 49  0  0  1  0            999 V2000
    2.8179    2.0354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0776    1.2523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8856    1.0858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1454    0.3027    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9640    0.4047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7594    0.1856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1295    0.9230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4104   -0.3211    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0345    0.2185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8138   -0.0521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8179   -1.0385    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0169   -1.2360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9572   -2.0588    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7214   -2.3699    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2533   -1.7392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1941   -3.3035    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7782   -3.8861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4767   -3.7110    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7365   -4.4941    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1882   -5.1106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4480   -5.8936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5445   -4.6607    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.1542   -4.1049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8712   -4.5130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7046   -5.3210    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.2604   -5.9307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0102   -6.7169    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5660   -7.3266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3159   -8.1128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8717   -8.7225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2043   -6.8934    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9542   -7.6795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6486   -6.2837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8847   -5.4123    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6581   -3.8130    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8627   -3.5940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4927   -4.3313    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2117   -3.0872    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5876   -3.6268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8042   -2.3699    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0401   -2.0588    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0997   -1.2360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9008   -1.0385    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3361   -1.7392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4280   -0.1048    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8439    0.4778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 11 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 22 19  1  1  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 27 31  1  1  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 25 34  1  0  0  0  0
 22 34  1  0  0  0  0
 18 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 36 38  1  0  0  0  0
 38 39  1  1  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  1  0  0  0
 40 44  1  1  0  0  0
 43 45  1  0  0  0  0
  4 45  1  0  0  0  0
 45 46  1  1  0  0  0
M  END


  Mrv1652309062205402D          

 46 49  0  0  1  0            999 V2000
    2.8179    2.0354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0776    1.2523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8856    1.0858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1454    0.3027    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9640    0.4047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7594    0.1856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1295    0.9230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4104   -0.3211    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0345    0.2185    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8138   -0.0521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8179   -1.0385    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0169   -1.2360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9572   -2.0588    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7214   -2.3699    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2533   -1.7392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1941   -3.3035    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7782   -3.8861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4767   -3.7110    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7365   -4.4941    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1882   -5.1106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4480   -5.8936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5445   -4.6607    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.1542   -4.1049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8712   -4.5130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7046   -5.3210    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.2604   -5.9307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0102   -6.7169    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5660   -7.3266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3159   -8.1128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8717   -8.7225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2043   -6.8934    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9542   -7.6795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6486   -6.2837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8847   -5.4123    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6581   -3.8130    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8627   -3.5940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4927   -4.3313    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2117   -3.0872    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5876   -3.6268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8042   -2.3699    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0401   -2.0588    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0997   -1.2360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9008   -1.0385    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3361   -1.7392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4280   -0.1048    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8439    0.4778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 11 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 22 19  1  1  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 27 31  1  1  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 25 34  1  0  0  0  0
 22 34  1  0  0  0  0
 18 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 36 38  1  0  0  0  0
 38 39  1  1  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  1  0  0  0
 40 44  1  1  0  0  0
 43 45  1  0  0  0  0
  4 45  1  0  0  0  0
 45 46  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0225071

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC[C@H](C[C@@H]1CC[C@@H](O1)[C@@H](CC)[C@@H]1OC(=O)[C@@H](C)[C@H]2CC[C@H](O2)[C@@H](C)[C@H](CCC)OC(=O)[C@H](CC)[C@H]2CC[C@H](O2)[C@H]1C)N(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C38H67NO7/c1-10-14-26(39(8)9)22-27-16-17-34(42-27)28(12-3)36-24(6)32-20-21-35(44-32)29(13-4)38(41)45-30(15-11-2)23(5)31-18-19-33(43-31)25(7)37(40)46-36/h23-36H,10-22H2,1-9H3/t23-,24+,25-,26+,27-,28+,29+,30-,31-,32-,33+,34+,35+,36+/m0/s1

> <INCHI_KEY>
MFMJBJLUIRYLLE-CTVFDYKESA-N

> <FORMULA>
C38H67NO7

> <MOLECULAR_WEIGHT>
649.954

> <EXACT_MASS>
649.491753501

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
113

> <JCHEM_AVERAGE_POLARIZABILITY>
77.10534706648657

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,5R,6R,7S,10R,11R,14S,15R,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

> <JCHEM_LOGP>
7.655511778666666

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
10.0009104038788

> <JCHEM_POLAR_SURFACE_AREA>
83.53000000000002

> <JCHEM_REFRACTIVITY>
180.71959999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,5R,6R,7S,10R,11R,14S,15R,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       5.260   3.799   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.745   2.338   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.253   2.027   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.738   0.565   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       9.266   0.755   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      10.751   0.347   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      11.442   1.723   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      11.966  -0.599   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.131   0.408   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.586  -0.097   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.727  -1.938   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.232  -2.307   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.120  -3.843   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.547  -4.424   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      13.539  -3.247   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      11.562  -6.167   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.653  -7.254   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.223  -6.927   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.708  -8.389   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.685  -9.540   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.170 -11.001   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.216  -8.700   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      13.354  -7.662   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      14.693  -8.424   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      14.382  -9.933   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.419 -11.071   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.952 -12.538   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      15.990 -13.676   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      15.523 -15.144   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      16.560 -16.282   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0      13.448 -12.868   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0      12.981 -14.335   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.411 -11.729   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      12.851 -10.103   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       8.695  -7.118   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       7.210  -6.709   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       6.520  -8.085   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       5.995  -5.763   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       4.830  -6.770   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.234  -4.424   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       3.808  -3.843   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       3.920  -2.307   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       5.415  -1.938   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       6.227  -3.247   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0       6.399  -0.196   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       5.309   0.892   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   45                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12   15                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14   11                                                       
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   35                                                  
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23   34                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   34                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   31                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29                                                            
CONECT   31   27   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   25   22                                                       
CONECT   35   18   36                                                       
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41   44                                                  
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44   45                                                  
CONECT   44   43   40                                                       
CONECT   45   43    4   46                                                  
CONECT   46   45                                                            
MASTER        0    0    0    0    0    0    0    0   46    0   98    0
END

View in JSmol

Synonyms

Value	Source
Pamamycin-649b	MeSH

Chemical Formula

C₃₈H₆₇NO₇

Average Mass

649.9540 Da

Monoisotopic Mass

649.49175 Da

IUPAC Name

(1R,2S,5R,6R,7S,10R,11R,14S,15R,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

Traditional Name

CAS Registry Number

Not Available

SMILES

CCC[C@H](C[C@@H]1CC[C@@H](O1)[C@@H](CC)[C@@H]1OC(=O)[C@@H](C)[C@H]2CC[C@H](O2)[C@@H](C)[C@H](CCC)OC(=O)[C@H](CC)[C@H]2CC[C@H](O2)[C@H]1C)N(C)C

InChI Identifier

InChI=1S/C38H67NO7/c1-10-14-26(39(8)9)22-27-16-17-34(42-27)28(12-3)36-24(6)32-20-21-35(44-32)29(13-4)38(41)45-30(15-11-2)23(5)31-18-19-33(43-31)25(7)37(40)46-36/h23-36H,10-22H2,1-9H3/t23-,24+,25-,26+,27-,28+,29+,30-,31-,32-,33+,34+,35+,36+/m0/s1

InChI Key

MFMJBJLUIRYLLE-CTVFDYKESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces alboniger	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolides and analogues

Sub Class

Not Available

Direct Parent

Macrolides and analogues

Alternative Parents

Substituents

Macrolide
Dicarboxylic acid or derivatives
Oxolane
Amino acid or derivatives
Carboxylic acid ester
Lactone
Tertiary aliphatic amine
Tertiary amine
Carboxylic acid derivative
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Organic nitrogen compound
Organic oxide
Amine
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Organonitrogen compound
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.66	ChemAxon
pKa (Strongest Basic)	10	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	83.53 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	180.72 m³·mol⁻¹	ChemAxon
Polarizability	77.11 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78436433

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15694393

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Fischer P, Gruner M, Jager A, Kataeva O, Metz P: Total synthesis of pamamycin-649B. Chemistry. 2011 Nov 18;17(47):13334-40. doi: 10.1002/chem.201102093. Epub 2011 Oct 20. [PubMed:22012748 ]
LOTUS database [Link]

Showing NP-Card for (1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione (NP0225071)

MOL for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D MOL for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D SDF for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D-SDF for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

PDB for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D PDB for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

SMILES for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

INCHI for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

Structure for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D Structure for NP0225071 ((1r,2s,5r,6r,7s,10r,11r,14s,15r,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]propyl]-11-ethyl-2,6,15-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)