NP-MRD: Showing NP-Card for 5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one (NP0224309)

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Record Information

Version

2.0

Created at

2022-09-06 02:38:14 UTC

Updated at

2022-09-06 02:38:14 UTC

NP-MRD ID

NP0224309

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one

Description

5-Hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxy-4H-chromen-4-one belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety. 5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one is found in Pseudophegopteris hirtirachis. 5-Hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxy-4H-chromen-4-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004191520382D          

 22 24  0  0  0  0            999 V2000
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7565   -2.2820    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5690   -0.8748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3815   -0.7315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9118   -1.3635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7242   -1.2202    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6296   -2.1387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8171   -2.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  2  0  0  0  0
  3 14  1  0  0  0  0
 11 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 15 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0224309

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(O)=C2C(=O)C=C(OC2=C1)C1(O)CCC(=O)CC1

> <INCHI_IDENTIFIER>
InChI=1S/C16H16O6/c1-21-10-6-11(18)15-12(19)8-14(22-13(15)7-10)16(20)4-2-9(17)3-5-16/h6-8,18,20H,2-5H2,1H3

> <INCHI_KEY>
KFJURKSPWBQUFA-UHFFFAOYSA-N

> <FORMULA>
C16H16O6

> <MOLECULAR_WEIGHT>
304.298

> <EXACT_MASS>
304.094688235

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
30.163771413766217

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxy-4H-chromen-4-one

> <ALOGPS_LOGP>
1.26

> <JCHEM_LOGP>
1.5572282353333335

> <ALOGPS_LOGS>
-2.85

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.364451199364318

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.369904262791968

> <JCHEM_PKA_STRONGEST_BASIC>
-3.4790909586304073

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
78.6402

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.31e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 19-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-APR-15         0                                  
HETATM    1  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       7.012  -4.260   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       8.529  -1.633   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.045  -1.365   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.035  -2.545   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      12.552  -2.278   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      10.509  -3.992   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.992  -4.260   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   14                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   13                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   15                                                  
CONECT   12   11   13                                                       
CONECT   13   12    7   14                                                  
CONECT   14   13    3                                                       
CONECT   15   11   16   17   22                                             
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   15                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₆O₆

Average Mass

304.2980 Da

Monoisotopic Mass

304.09469 Da

IUPAC Name

5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxy-4H-chromen-4-one

Traditional Name

5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one

CAS Registry Number

Not Available

SMILES

COC1=CC(O)=C2C(=O)C=C(OC2=C1)C1(O)CCC(=O)CC1

InChI Identifier

InChI=1S/C16H16O6/c1-21-10-6-11(18)15-12(19)8-14(22-13(15)7-10)16(20)4-2-9(17)3-5-16/h6-8,18,20H,2-5H2,1H3

InChI Key

KFJURKSPWBQUFA-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pseudophegopteris hirtirachis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Chromones

Alternative Parents

Substituents

Chromone
Anisole
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Pyranone
Pyran
Benzenoid
Tertiary alcohol
Heteroaromatic compound
Cyclic alcohol
Vinylogous acid
Cyclic ketone
Ketone
Ether
Oxacycle
Organic oxygen compound
Alcohol
Organooxygen compound
Hydrocarbon derivative
Carbonyl group
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.26	ALOGPS
logP	1.56	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	7.37	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	78.64 m³·mol⁻¹	ChemAxon
Polarizability	30.16 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13965743

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one (NP0224309)

MOL for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

3D MOL for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

3D SDF for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

3D-SDF for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

PDB for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

3D PDB for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

SMILES for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

INCHI for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

Structure for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)

3D Structure for NP0224309 (5-hydroxy-2-(1-hydroxy-4-oxocyclohexyl)-7-methoxychromen-4-one)