NP-MRD: Showing NP-Card for (1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one (NP0224285)

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Record Information

Version

2.0

Created at

2022-09-06 02:36:30 UTC

Updated at

2022-09-06 02:36:30 UTC

NP-MRD ID

NP0224285

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one

Description

13,18-Dihydroxyabieta-8(14)-ene-7-one belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. (1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one is found in Larix kaempferi. Based on a literature review very few articles have been published on 13,18-Dihydroxyabieta-8(14)-ene-7-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309062204362D          

 23 25  0  0  1  0            999 V2000
   -2.7427   -2.1678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8859   -1.3553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6612   -1.0731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2539   -0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8859   -0.2947    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0164   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0164   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2211   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6336   -1.5395    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2211   -0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1914   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6336   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4586   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8711   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4586   -1.5395    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1582   -1.9767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4874   -2.3640    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2158   -2.7513    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039   -0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0164   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  1  0  0  0
  4  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  1  0  0  0
 19 20  1  0  0  0  0
 12 21  1  0  0  0  0
 21  7  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  4 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0224285

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@]1(O)CC[C@H]2C(=C1)C(=O)C[C@H]1[C@](C)(CO)CCC[C@]21C

> <INCHI_IDENTIFIER>
InChI=1S/C20H32O3/c1-13(2)20(23)9-6-15-14(11-20)16(22)10-17-18(3,12-21)7-5-8-19(15,17)4/h11,13,15,17,21,23H,5-10,12H2,1-4H3/t15-,17-,18-,19+,20+/m0/s1

> <INCHI_KEY>
PMKRDHYIJLQVRT-AEEMCCEDSA-N

> <FORMULA>
C20H32O3

> <MOLECULAR_WEIGHT>
320.473

> <EXACT_MASS>
320.23514489

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
37.69422914109302

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,4aS,4bR,7S,10aR)-7-hydroxy-1-(hydroxymethyl)-1,4a-dimethyl-7-(propan-2-yl)-1,2,3,4,4a,4b,5,6,7,9,10,10a-dodecahydrophenanthren-9-one

> <JCHEM_LOGP>
3.137051389666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.65199968020222

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.132499583614539

> <JCHEM_PKA_STRONGEST_BASIC>
-1.2014089614087196

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
92.56599999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4aS,4bR,7S,10aR)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      -5.120  -4.046   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.387  -2.530   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -6.834  -2.003   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.207  -1.540   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -5.387  -0.550   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -3.437  -2.874   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.897  -2.874   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.127  -4.207   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.897  -5.541   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.413  -4.207   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.183  -2.874   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.413  -1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.357  -0.206   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.183  -0.206   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.723  -0.206   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.493  -1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.723  -2.874   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.029  -3.690   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.776  -4.413   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.136  -5.136   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -1.127  -1.540   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.897  -0.206   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.437  -0.206   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    6   23                                             
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8   21                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13   14   21                                             
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18   19                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19                                                            
CONECT   21   12    7   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22    4                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂O₃

Average Mass

320.4730 Da

Monoisotopic Mass

320.23514 Da

IUPAC Name

(1R,4aS,4bR,7S,10aR)-7-hydroxy-1-(hydroxymethyl)-1,4a-dimethyl-7-(propan-2-yl)-1,2,3,4,4a,4b,5,6,7,9,10,10a-dodecahydrophenanthren-9-one

Traditional Name

(1R,4aS,4bR,7S,10aR)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one

CAS Registry Number

Not Available

SMILES

CC(C)[C@@]1(O)CC[C@H]2C(=C1)C(=O)C[C@H]1[C@](C)(CO)CCC[C@]21C

InChI Identifier

InChI=1S/C20H32O3/c1-13(2)20(23)9-6-15-14(11-20)16(22)10-17-18(3,12-21)7-5-8-19(15,17)4/h11,13,15,17,21,23H,5-10,12H2,1-4H3/t15-,17-,18-,19+,20+/m0/s1

InChI Key

PMKRDHYIJLQVRT-AEEMCCEDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Larix kaempferi	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Abietane diterpenoid
Phenanthrene
Hydrophenanthrene
Tertiary alcohol
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.14	ChemAxon
pKa (Strongest Acidic)	14.13	ChemAxon
pKa (Strongest Basic)	-1.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	92.57 m³·mol⁻¹	ChemAxon
Polarizability	37.69 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8838877

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10663524

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one (NP0224285)

MOL for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

3D MOL for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

3D SDF for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

3D-SDF for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

PDB for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

3D PDB for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

SMILES for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

INCHI for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

Structure for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)

3D Structure for NP0224285 ((1r,4as,4br,7s,10ar)-7-hydroxy-1-(hydroxymethyl)-7-isopropyl-1,4a-dimethyl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-9-one)