NP-MRD: Showing NP-Card for 2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate (NP0223876)

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Record Information

Version

2.0

Created at

2022-09-06 02:05:50 UTC

Updated at

2022-09-06 02:05:51 UTC

NP-MRD ID

NP0223876

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate

Description

2-(3,4-Dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring. 2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate is found in Haplopteris anguste-elongata. 2-(3,4-Dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004161519502D          

 24 25  0  0  0  0            999 V2000
    1.4289   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0392   -4.0481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5912   -3.4350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4117   -3.5212    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1787   -2.7205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5143   -1.9668    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6282   -2.8920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2413   -2.3400    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  5  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
  9 16  1  0  0  0  0
  2 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 17 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0223876

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(COC(=O)C=CC1=CC=C(O)C(O)=C1)C1OC(=O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C15H16O9/c16-8-3-1-7(5-9(8)17)2-4-11(19)23-6-10(18)14-12(20)13(21)15(22)24-14/h1-5,10,12-14,16-18,20-21H,6H2

> <INCHI_KEY>
VFAMSKXGISQMEE-UHFFFAOYSA-N

> <FORMULA>
C15H16O9

> <MOLECULAR_WEIGHT>
340.284

> <EXACT_MASS>
340.079432095

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
31.825892695961688

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate

> <ALOGPS_LOGP>
0.49

> <JCHEM_LOGP>
-0.3185131113333338

> <ALOGPS_LOGS>
-2.01

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.582503585527476

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.206966979424738

> <JCHEM_PKA_STRONGEST_BASIC>
-3.548199698079169

> <JCHEM_POLAR_SURFACE_AREA>
153.75

> <JCHEM_REFRACTIVITY>
78.30830000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.31e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  O   UNK     0       2.667  -9.240   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.335  -7.700   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      14.670 -10.010   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      12.003 -11.550   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.073  -7.556   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -1.104  -6.412   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -2.635  -6.573   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.334  -5.078   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.960  -3.671   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.173  -5.398   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.317  -4.368   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   17                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    9                                                       
CONECT   17    2   18   23                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   17   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   50    0
END

View in JSmol

Synonyms

Value	Source
2-(3,4-Dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoic acid	Generator

Chemical Formula

C₁₅H₁₆O₉

Average Mass

340.2840 Da

Monoisotopic Mass

340.07943 Da

IUPAC Name

2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate

Traditional Name

2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate

CAS Registry Number

Not Available

SMILES

OC(COC(=O)C=CC1=CC=C(O)C(O)=C1)C1OC(=O)C(O)C1O

InChI Identifier

InChI=1S/C15H16O9/c16-8-3-1-7(5-9(8)17)2-4-11(19)23-6-10(18)14-12(20)13(21)15(22)24-14/h1-5,10,12-14,16-18,20-21H,6H2

InChI Key

VFAMSKXGISQMEE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Haplopteris anguste-elongata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Coumaric acids and derivatives

Alternative Parents

Substituents

Coumaric acid or derivatives
Cinnamic acid ester
Catechol
Styrene
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Fatty acid ester
Phenol
Benzenoid
Fatty acyl
Dicarboxylic acid or derivatives
Monocyclic benzene moiety
Gamma butyrolactone
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Oxolane
Carboxylic acid ester
Secondary alcohol
Lactone
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.49	ALOGPS
logP	-0.32	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	9.21	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	153.75 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	78.31 m³·mol⁻¹	ChemAxon
Polarizability	31.83 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

72983372

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate (NP0223876)

MOL for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

3D MOL for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

3D SDF for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

3D-SDF for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

PDB for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

3D PDB for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

SMILES for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

INCHI for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

Structure for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)

3D Structure for NP0223876 (2-(3,4-dihydroxy-5-oxooxolan-2-yl)-2-hydroxyethyl 3-(3,4-dihydroxyphenyl)prop-2-enoate)