NP-MRD: Showing NP-Card for (3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate (NP0223105)

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Record Information

Version

2.0

Created at

2022-09-06 01:06:29 UTC

Updated at

2022-09-06 01:06:29 UTC

NP-MRD ID

NP0223105

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate

Description

(3R,3aR,4aS,5R,7S,7aS,8R,9aR)-5-hydroxy-3,4a,8-trimethyl-2-oxo-dodecahydroazuleno[6,5-b]furan-7-yl acetate belongs to the class of organic compounds known as ambrosanolides and secoambrosanolides. These are sesquiterpene lactones from the Ambrosia family, with a backbone derivative of azuleno[6,5-b]furan-2-one (ambrosanolides) or azuleno[4,5-b]furan-2-one (secoambrosanolides). (3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate is found in Arnica angustifolia. Based on a literature review very few articles have been published on (3R,3aR,4aS,5R,7S,7aS,8R,9aR)-5-hydroxy-3,4a,8-trimethyl-2-oxo-dodecahydroazuleno[6,5-b]furan-7-yl acetate.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309062203062D          

 22 24  0  0  1  0            999 V2000
   -0.8576   -2.9827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4345   -2.2744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8363   -1.5539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3904   -2.2868    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8136   -1.5786    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4893   -0.8199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1106   -0.2772    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0366    0.5445    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8188   -0.7003    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8558    0.1239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5621   -0.3423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3054   -0.7003    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4890   -1.5046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9746   -2.1496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1496   -2.1496    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7917   -2.8929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352   -1.5046    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3107   -1.5786    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6349   -0.8199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4392   -0.6364    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0136   -0.2772    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0876    0.5445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 12 11  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17  5  1  6  0  0  0
  9 17  1  0  0  0  0
 13 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 12 21  1  0  0  0  0
 21 22  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0223105

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1[C@H]2C[C@]3(C)[C@H](O)C[C@H](OC(C)=O)[C@H]3[C@H](C)C[C@H]2OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C17H26O5/c1-8-5-12-11(9(2)16(20)22-12)7-17(4)14(19)6-13(15(8)17)21-10(3)18/h8-9,11-15,19H,5-7H2,1-4H3/t8-,9-,11-,12-,13+,14-,15-,17-/m1/s1

> <INCHI_KEY>
VBOIEJXYHWUAHA-LWARHHFCSA-N

> <FORMULA>
C17H26O5

> <MOLECULAR_WEIGHT>
310.39

> <EXACT_MASS>
310.178023937

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
33.38201327978445

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,3aR,4aS,5R,7S,7aS,8R,9aR)-5-hydroxy-3,4a,8-trimethyl-2-oxo-dodecahydroazuleno[6,5-b]furan-7-yl acetate

> <JCHEM_LOGP>
1.3927219690000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.611961859397603

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9685278826994885

> <JCHEM_POLAR_SURFACE_AREA>
72.83000000000001

> <JCHEM_REFRACTIVITY>
78.83239999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R,3aR,4aS,5R,7S,7aS,8R,9aR)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.601  -5.568   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.811  -4.246   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.561  -2.901   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       0.729  -4.269   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.519  -2.947   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.913  -1.531   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.073  -0.517   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.935   1.016   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       3.395  -1.307   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.464   0.231   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.783  -0.639   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.170  -1.307   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.513  -2.809   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.553  -4.013   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.013  -4.013   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.344  -5.400   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.052  -2.809   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       8.047  -2.947   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       8.652  -1.531   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      10.153  -1.188   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       7.492  -0.517   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.630   1.016   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11   17                                             
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   21                                                  
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    5    9                                                  
CONECT   18   13   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   12   22                                                  
CONECT   22   21                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Value	Source
(3R,3AR,4as,5R,7S,7as,8R,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-dodecahydroazuleno[6,5-b]furan-7-yl acetic acid	Generator

Chemical Formula

C₁₇H₂₆O₅

Average Mass

310.3900 Da

Monoisotopic Mass

310.17802 Da

IUPAC Name

(3R,3aR,4aS,5R,7S,7aS,8R,9aR)-5-hydroxy-3,4a,8-trimethyl-2-oxo-dodecahydroazuleno[6,5-b]furan-7-yl acetate

Traditional Name

(3R,3aR,4aS,5R,7S,7aS,8R,9aR)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@@H]1[C@H]2C[C@]3(C)[C@H](O)C[C@H](OC(C)=O)[C@H]3[C@H](C)C[C@H]2OC1=O

InChI Identifier

InChI=1S/C17H26O5/c1-8-5-12-11(9(2)16(20)22-12)7-17(4)14(19)6-13(15(8)17)21-10(3)18/h8-9,11-15,19H,5-7H2,1-4H3/t8-,9-,11-,12-,13+,14-,15-,17-/m1/s1

InChI Key

VBOIEJXYHWUAHA-LWARHHFCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arnica angustifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ambrosanolides and secoambrosanolides. These are sesquiterpene lactones from the Ambrosia family, with a backbone derivative of azuleno[6,5-b]furan-2-one (ambrosanolides) or azuleno[4,5-b]furan-2-one (secoambrosanolides).

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Ambrosanolides and secoambrosanolides

Alternative Parents

Substituents

Ambrosanolide
Sesquiterpenoid
Pseudoguaiane sesquiterpenoid
Dicarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Carboxylic acid ester
Secondary alcohol
Lactone
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.39	ChemAxon
pKa (Strongest Acidic)	14.61	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	72.83 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	78.83 m³·mol⁻¹	ChemAxon
Polarizability	33.38 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163019049

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate (NP0223105)

MOL for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

3D MOL for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

3D SDF for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

3D-SDF for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

PDB for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

3D PDB for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

SMILES for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

INCHI for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

Structure for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)

3D Structure for NP0223105 ((3r,3ar,4as,5r,7s,7as,8r,9ar)-5-hydroxy-3,4a,8-trimethyl-2-oxo-decahydroazuleno[6,5-b]furan-7-yl acetate)