NP-MRD: Showing NP-Card for methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate (NP0222976)

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Record Information

Version

2.0

Created at

2022-09-06 00:56:48 UTC

Updated at

2022-09-06 00:56:49 UTC

NP-MRD ID

NP0222976

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate

Description

(+)-(Z)-antazirine belongs to the class of organic compounds known as alpha amino acid esters. These are ester derivatives of alpha amino acids. methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate is found in Dysidea fragilis. Based on a literature review very few articles have been published on (+)-(Z)-antazirine.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309062202562D          

 22 22  0  0  1  0            999 V2000
   -0.5230    5.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5230    4.4270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    4.0145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9520    4.4270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    3.1895    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8250    2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3645    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3645    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4934    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9224    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6368    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3513    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0658    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7802    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4947    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2092    1.2375    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    5.4947   -0.0000    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0222976

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@H]1N=C1\C=C/CCCCCCCCCC=C(Br)Br

> <INCHI_IDENTIFIER>
InChI=1S/C17H25Br2NO2/c1-22-17(21)16-14(20-16)12-10-8-6-4-2-3-5-7-9-11-13-15(18)19/h10,12-13,16H,2-9,11H2,1H3/b12-10-/t16-/m0/s1

> <INCHI_KEY>
KUIICVNFNJTIGS-DMIOIOJGSA-N

> <FORMULA>
C17H25Br2NO2

> <MOLECULAR_WEIGHT>
435.2

> <EXACT_MASS>
433.025205

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
47

> <JCHEM_AVERAGE_POLARIZABILITY>
40.18806464507858

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (2S)-3-[(1Z)-13,13-dibromotrideca-1,12-dien-1-yl]-2H-azirine-2-carboxylate

> <JCHEM_LOGP>
6.523219121666668

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.800675473771925

> <JCHEM_PKA_STRONGEST_BASIC>
1.577373538367621

> <JCHEM_POLAR_SURFACE_AREA>
38.66

> <JCHEM_REFRACTIVITY>
109.3114

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2S)-3-[(1Z)-13,13-dibromotrideca-1,12-dien-1-yl]-2H-azirine-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.976   9.804   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -0.976   8.264   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.310   7.494   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -3.644   8.264   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.310   5.954   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      -1.540   4.620   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      -3.080   4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.414   3.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.414   2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.080   1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.746   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.413   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.921   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.255   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.588   2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.922   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.256   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.589   1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.923   2.310   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.257   1.540   0.000  0.00  0.00           C+0
HETATM   21 Br   UNK     0      11.590   2.310   0.000  0.00  0.00          Br+0
HETATM   22 Br   UNK     0      10.257  -0.000   0.000  0.00  0.00          Br+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5    7                                                       
CONECT    7    6    5    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₂₅Br₂NO₂

Average Mass

435.2000 Da

Monoisotopic Mass

433.02520 Da

IUPAC Name

methyl (2S)-3-[(1Z)-13,13-dibromotrideca-1,12-dien-1-yl]-2H-azirine-2-carboxylate

Traditional Name

methyl (2S)-3-[(1Z)-13,13-dibromotrideca-1,12-dien-1-yl]-2H-azirine-2-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@H]1N=C1\C=C/CCCCCCCCCC=C(Br)Br

InChI Identifier

InChI=1S/C17H25Br2NO2/c1-22-17(21)16-14(20-16)12-10-8-6-4-2-3-5-7-9-11-13-15(18)19/h10,12-13,16H,2-9,11H2,1H3/b12-10-/t16-/m0/s1

InChI Key

KUIICVNFNJTIGS-DMIOIOJGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dysidea fragilis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acid esters. These are ester derivatives of alpha amino acids.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acid esters

Alternative Parents

Substituents

Alpha-amino acid ester
Methyl ester
Carboxylic acid ester
Ketene acetal or derivatives
Ketimine
Azirine
Monocarboxylic acid or derivatives
Vinyl bromide
Vinyl halide
Azacycle
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Organoheterocyclic compound
Haloalkene
Bromoalkene
Organobromide
Organonitrogen compound
Organooxygen compound
Carbonyl group
Organic oxygen compound
Imine
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Organohalogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.52	ChemAxon
pKa (Strongest Acidic)	8.8	ChemAxon
pKa (Strongest Basic)	1.58	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	38.66 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	109.31 m³·mol⁻¹	ChemAxon
Polarizability	40.19 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24658460

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46882024

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate (NP0222976)

MOL for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

3D MOL for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

3D SDF for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

3D-SDF for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

PDB for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

3D PDB for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

SMILES for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

INCHI for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

Structure for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)

3D Structure for NP0222976 (methyl (2s)-3-[(1z)-13,13-dibromotrideca-1,12-dien-1-yl]-2h-azirine-2-carboxylate)