NP-MRD: Showing NP-Card for (5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione (NP0221929)

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Record Information

Version

2.0

Created at

2022-09-05 23:37:43 UTC

Updated at

2022-09-05 23:37:43 UTC

NP-MRD ID

NP0221929

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione

Description

PD116740 belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group. PD116740 is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. (5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione was first documented in 2019 (PMID: 29972031). Based on a literature review very few articles have been published on PD116740.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062201372D          

 27 30  0  0  1  0            999 V2000
    5.8453    2.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352    1.9716    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3052    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946   -0.8348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9058    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1758   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    1.9716    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.5952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647    2.1275    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3347    2.9071    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  2  0  0  0  0
 12 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  2  0  0  0  0
 15 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 11 26  1  0  0  0  0
 26 27  1  6  0  0  0
M  END

     RDKit          3D

 43 46  0  0  0  0  0  0  0  0999 V2000
   -5.6783    2.4353    0.6334 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3331    2.0484    0.4651 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0141    0.7068    0.3666 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0219   -0.2399    0.4348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6684   -1.5684    0.3329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3345   -1.9497    0.1660 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3484   -1.0077    0.1000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6932    0.3106    0.2003 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6794    1.3415    0.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0300    2.5415    0.2240 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2990    0.9179   -0.0465 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0668   -0.3745   -0.1371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9307   -1.4101   -0.0739 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282   -2.6041   -0.1470 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4950   -0.7430   -0.1354 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8861   -2.0186   -0.4036 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0555   -3.0682   -0.5453 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2524   -2.2725   -0.5491 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1892   -1.2756   -0.4293 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6548   -1.5534   -0.5881 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2591   -1.8844    0.6017 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7797    0.0027   -0.1581 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4424    0.2784   -0.0078 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9829    1.6184    0.4103 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9834    2.5809    0.2188 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7121    1.9686   -0.2578 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2296    3.2195    0.1620 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8038    3.5354    0.6027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3057    1.9531   -0.1659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1057    2.0903    1.5976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0634    0.0650    0.5656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4337   -2.3323    0.3826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0546   -2.9905    0.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4127   -4.0099   -0.7531 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5934   -3.2796   -0.7622 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7545   -2.4219   -1.2933 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1563   -0.6980   -1.1109 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6936   -1.0620    0.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4680    0.8376   -0.0512 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7817    1.6441    1.5217 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1706    2.7245   -0.7418 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8786    1.9940   -1.3759 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6281    3.9497   -0.3633 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 12 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 19 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
  8  3  1  0
 26 11  1  0
 13  7  1  0
 23 15  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  4 31  1  0
  5 32  1  0
  6 33  1  0
 17 34  1  0
 18 35  1  0
 20 36  1  0
 20 37  1  0
 21 38  1  0
 22 39  1  0
 24 40  1  1
 25 41  1  0
 26 42  1  6
 27 43  1  0
M  END


  Mrv1652309062201372D          

 27 30  0  0  1  0            999 V2000
    5.8453    2.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352    1.9716    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3052    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946   -0.8348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9058    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1758   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    1.9716    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.5952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647    2.1275    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3347    2.9071    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  2  0  0  0  0
 12 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  2  0  0  0  0
 15 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 11 26  1  0  0  0  0
 26 27  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0221929

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=CC2=C1C(=O)C1=C(C2=O)C2=C(O)C=C(CO)C=C2[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C20H16O7/c1-27-12-4-2-3-9-14(12)19(25)16-15(17(9)23)13-10(18(24)20(16)26)5-8(7-21)6-11(13)22/h2-6,18,20-22,24,26H,7H2,1H3/t18-,20-/m1/s1

> <INCHI_KEY>
ZJSLMQLVFYXGOW-UYAOXDASSA-N

> <FORMULA>
C20H16O7

> <MOLECULAR_WEIGHT>
368.341

> <EXACT_MASS>
368.089602855

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
36.61300865065658

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5R,6R)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6,7,12-tetrahydrotetraphene-7,12-dione

> <JCHEM_LOGP>
0.22925815333333316

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.973766034427733

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.004991394910666

> <JCHEM_PKA_STRONGEST_BASIC>
-2.865494950468902

> <JCHEM_POLAR_SURFACE_AREA>
124.29000000000002

> <JCHEM_REFRACTIVITY>
96.2144

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5R,6R)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      10.911   3.971   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       9.399   3.680   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.895   2.225   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.903   1.061   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.399  -0.394   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.887  -0.685   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.879   0.479   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.383   1.934   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.375   3.098   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.879   4.553   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.862   2.807   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.358   1.352   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.366   0.188   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.862  -1.267   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.846   1.061   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.342  -0.394   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.350  -1.558   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.830  -0.685   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.179   0.479   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.691   0.188   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -2.195  -1.267   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       0.326   1.934   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.838   2.225   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.342   3.680   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       1.334   4.844   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.854   3.971   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.358   5.427   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   13                                                  
CONECT    8    7    3    9                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   26                                                  
CONECT   12   11   13   15                                                  
CONECT   13   12    7   14                                                  
CONECT   14   13                                                            
CONECT   15   12   16   23                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23                                                       
CONECT   23   22   15   24                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   11   27                                                  
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₁₆O₇

Average Mass

368.3410 Da

Monoisotopic Mass

368.08960 Da

IUPAC Name

(5R,6R)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6,7,12-tetrahydrotetraphene-7,12-dione

Traditional Name

(5R,6R)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione

CAS Registry Number

Not Available

SMILES

COC1=CC=CC2=C1C(=O)C1=C(C2=O)C2=C(O)C=C(CO)C=C2[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C20H16O7/c1-27-12-4-2-3-9-14(12)19(25)16-15(17(9)23)13-10(18(24)20(16)26)5-8(7-21)6-11(13)22/h2-6,18,20-22,24,26H,7H2,1H3/t18-,20-/m1/s1

InChI Key

ZJSLMQLVFYXGOW-UYAOXDASSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyanthraquinones. Hydroxyanthraquinones are compounds containing a hydroxyanthraquinone moiety, which consists of an anthracene bearing a quinone, and hydroxyl group.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Hydroxyanthraquinones

Alternative Parents

Substituents

Hydroxyanthraquinone
Phenanthrene
1-naphthol
Naphthalene
Anisole
Quinone
Aryl ketone
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
Secondary alcohol
Ketone
Polyol
Ether
Primary alcohol
Organic oxide
Organooxygen compound
Organic oxygen compound
Aromatic alcohol
Alcohol
Hydrocarbon derivative
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

hydroxyanthraquinones (CHEBI:31956 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.23	ChemAxon
pKa (Strongest Acidic)	8	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	124.29 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	96.21 m³·mol⁻¹	ChemAxon
Polarizability	36.61 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

391906

KEGG Compound ID

C12401

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

443809

PDB ID

Not Available

ChEBI ID

31956

Good Scents ID

Not Available

References

General References

Guo ZK, Wang R, Liu TM, Chen FX, Yang MQ: A new flavonoid derivative and a new 5-hydroxyanthranilic acid derivative from the sea urchin-derived Streptomyces sp. HDa1. J Asian Nat Prod Res. 2019 Oct;21(10):992-998. doi: 10.1080/10286020.2018.1485663. Epub 2018 Jul 4. [PubMed:29972031 ]
LOTUS database [Link]

Showing NP-Card for (5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione (NP0221929)

MOL for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

3D MOL for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

3D SDF for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

3D-SDF for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

PDB for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

3D PDB for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

SMILES for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

INCHI for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

Structure for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)

3D Structure for NP0221929 ((5r,6r)-1,5,6-trihydroxy-3-(hydroxymethyl)-8-methoxy-5,6-dihydrotetraphene-7,12-dione)